Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq667 120 3e-22 seq556 120 3e-22 seq223 100 3e-16 >seq667 Length=3682606 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || ||||| ||| || ||||| || ||| Sbjct 3145111 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 3145170 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 3145171 GCAAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 3145230 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | | ||| || || | ||| | ||| || || || || || Sbjct 3145231 ACGTTG-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 3145289 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 3145290 CTTGACGAAAATCTGCAT 3145307 >seq556 Length=5145791 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||| | || | || | || ||||| || || || ||||| |||| | Sbjct 1548092 CCACCGCGAAGTCGGAGAACGAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTC 1548151 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| |||| ||| || |||||| |||| | ||||||||||| || || Sbjct 1548152 AAGGTGCGACCATCTTCTAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 1548211 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||| | |||| |||| ||||| | |||||| Sbjct 1548212 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTG-TCGATAGTGTCACTGGACTCGAC 1548270 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || ||||| || |||||||||||||| Sbjct 1548271 CTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTTCACAAAAATCTGCAT 1548318 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| |||||||| | ||||| || || ||||| || || Sbjct 1548860 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 1548919 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| || ||||| || ||||| || |||||||| ||| || || |||| Sbjct 1548920 GCGAAGATCAAGCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTGGACTTG 1548979 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| ||||| | | ||| || |||| ||| | || ||||||||||| || Sbjct 1548980 ACGTTGT-CGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGT 1549038 Query 127096 TTTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 1549039 CTTGACAAAGATCTGCATG 1549057 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||| || || || || ||||| || Sbjct 1548320 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAA 1548379 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| ||||| || || |||||| |||| | |||||| ||||||||||| Sbjct 1548380 AGAGTTCGACCATCCTCTAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 1548439 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| || ||| | | || | ||| || | ||||||| Sbjct 1548440 ATACCCTCCTTGTCTTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 1548499 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || || || || || || || ||||| Sbjct 1548500 TCCAAAGTGATAGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 1548546 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| ||||| ||| | | || || || || || || |||||| Sbjct 1548578 GTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCA 1548637 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || ||||| || |||||||||||| ||| ||| ||| Sbjct 1548638 GCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTCGACTTA 1548697 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | |||||| || | ||| | || ||||| || || || Sbjct 1548698 ACATTGTCGATGGTATCGGATGACTCGACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTC 1548757 Query 127097 TTTAC 127101 || || Sbjct 1548758 TTGAC 1548762 >seq223 Length=6419709 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||| |||||| || || || || ||||||||||| Sbjct 4545399 ATCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCAGGGGGGATGCCCTCCTT 4545458 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| |||||| |||| ||| | Sbjct 4545459 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 4545518 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 4545519 GGTCTTGCCCGTCAGGGTCTTCACGAAA 4545546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496568042880