Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq556 145 2e-29 seq667 129 1e-24 >seq556 Length=5145791 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || |||||||| || |||||||| |||| ||||||||| ||| || Sbjct 1548098 CGAAGTCGGAGAACGAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 1548157 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| | |||||| || |||||||| ||||||||||| || || ||| || Sbjct 1548158 CGACCATCTTCTAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCC 1548217 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| |||| ||||| | | || || || | Sbjct 1548218 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGG 1548277 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| ||||||||||| || Sbjct 1548278 GTGATGGTCTTTCCAGTAAGAGTCTTCACAAAAATCTG 1548315 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| || ||||| |||| ||||||||| | | ||| Sbjct 1548326 CGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAAAGAGTT 1548385 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || ||||||||||| ||||| || || ||| ||| || Sbjct 1548386 CGACCATCCTCTAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCC 1548445 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| |||||| || | ||| || | || || || ||||| Sbjct 1548446 TCCTTGTCTTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAAA 1548505 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || || ||||| Sbjct 1548506 GTGATAGTCTTTCCAGTAAGGGTCTTGACGAAGATTTG 1548543 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || ||||| |||||||| || | |||||| |||| | ||| Sbjct 1548836 CGAAGGCGGAGAACGAGATGCAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTG 1548895 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| | || |||||||| ||| || || Sbjct 1548896 CGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGGATACCC 1548955 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| ||||| | | || || || | Sbjct 1548956 TCCTTATCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGG 1549015 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||| || || Sbjct 1549016 GTGATGGTCTTGCCGGTCAGGGTCTTGACAAAGATCTG 1549053 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || || || ||||| || | ||||||||| || | || | || ||| Sbjct 1548563 AGGACGAGATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 1548622 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||| || ||||| || ||||||||||| ||| || || || ||| Sbjct 1548623 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 1548682 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||| || | || || || || | ||||| ||| Sbjct 1548683 TGGATCTTCGACTTAACATTGTCGATGGTATCGGATGACTCGACCTCAAGGGTGATTGTC 1548742 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || ||||| || || || Sbjct 1548743 TTGCCAGTGAGGGTCTTGAC 1548762 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||||| |||||||| | || ||| ||| |||||| ||||| Sbjct 1548192 CTTATCTTCGCTGGTAAGCAGTTAGAAGATGGTCGCACCTTGAGCGACTACAACATCCAG 1548133 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| || || ||||| ||| | ||||||| Sbjct 1548132 AAGGAGTCAACCCTCCACCTCGTTCTCCGACTTCG 1548098 >seq667 Length=3682606 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| ||||||||| || || | ||||| Sbjct 3145096 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 3145155 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||| ||||||||||| || || || || ||| Sbjct 3145156 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 3145215 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||||||| Sbjct 3145216 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 3145275 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || ||||| || Sbjct 3145276 TTCCCCGTGAGGGTCTTGACGAAAATCTG 3145304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178910845287704