Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq556 132 5e-26 seq667 125 8e-24 seq223 111 2e-19 >seq556 Length=5145791 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| || |||||| || || ||||| || || |||||||| |||| || Sbjct 1548848 ACGAGATGCAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCA 1548907 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| |||||||| |||||||| | || | | |||||| ||| Sbjct 1548908 AGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGA 1548967 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | |||||| || || || || | |||||||| || Sbjct 1548968 ATCTTGGACTTGA-CGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTT 1549026 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || |||||||| ||||| Sbjct 1549027 GCCGGTCAGGGTCTTGACAAAGATCTGCAT 1549056 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || ||||| || | || || || |||||||| ||||| Sbjct 1548356 TCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGACCATCCTCTAGTTGCTTGCCAGCGAAG 1548415 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| || |||| || | | ||||||||| |||||| |||| | | Sbjct 1548416 ATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTTGGATCTTGCTCTTCACATTA 1548475 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| || || || |||| ||||| || || || || || || || || Sbjct 1548476 TCAATGGTATCGGATGACTCGACTTCCAAAGTGATAGTCTTTCCAGTAAGGGTCTTGACG 1548535 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 1548536 AAGATTTGCAT 1548546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||||| || || || |||| ||||| ||||| || || || Sbjct 1548584 TCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAG 1548643 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||||||| | || | | |||||||||| ||||||| ||| | | Sbjct 1548644 ATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTCGACTTAACATTG 1548703 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||| || || || || | ||||| || ||||| || || || || || Sbjct 1548704 TCGATGGTATCGGATGACTCGACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTCTTGAC 1548762 >seq667 Length=3682606 Score = 125 bits (138), Expect = 8e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || |||||||||||||| || || Sbjct 3145116 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 3145175 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 3145176 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 3145234 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || || ||||| || || || | Sbjct 3145235 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 3145294 Query 46581 CAAAGATTTGCATTTTGC 46598 | || || ||||| |||| Sbjct 3145295 CGAAAATCTGCATCTTGC 3145312 >seq223 Length=6419709 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| ||||| || | || ||||||||||| || ||||| | Sbjct 4545365 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 4545424 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||| ||||| | || | || |||||||||| |||||| ||||| | Sbjct 4545425 TCAGTCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4545484 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 4545485 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 4545544 Query 46584 A 46584 | Sbjct 4545545 A 4545545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233369378240