Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq223 174 2e-38 seq667 138 1e-27 >seq223 Length=6419709 Score = 174 bits (192), Expect = 2e-38 Identities = 531/812 (65%), Gaps = 25/812 (3%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| || | | |||||| || || ||||| || || Sbjct 1882674 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGT 1882615 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 |||||||||||| | ||||||| | | |||| || || | || || ||||| Sbjct 1882614 CTTGGAGACATACAATCTGATGTCCAGCAAGTTCTTCACGCATGCTTCCCCCACGCTCTT 1882555 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || |||||| |||| ||| ||| | ||| | ||||| || Sbjct 1882554 CAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGATGA 1882495 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || || |||| ||||||| |||||| ||||| ||| |||||| Sbjct 1882494 CAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGG 1882435 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908 |||||| || || | | || | || | || | | ||| || | | ||||| Sbjct 1882434 TGGTATTGGTCTGAATGTGCACCGTATCCGTGCTACT--GGCTCATACATCGCCGGTACC 1882377 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| ||| | ||| || |||| |||||||| || || ||| ||| || || ||| Sbjct 1882376 AACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTGTTCAACAACACTGCTCGGTAT 1882317 Query 111969 GTAAA------CCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAG 112016 | ||| | ||| ||| | | || || | || |||| || ||| Sbjct 1882316 GNNNNNNNNNNCCAGGGTGGCAACAAGCGACCC---GGTGCTTTTGCCATCTACCTCGAG 1882260 Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG 112076 || |||||| | ||| || | || |||||||| | ||| ||||| ||| | |||||| Sbjct 1882259 CCTTGGCACTCCGATGTCTTCGAATTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAG 1882200 Query 112077 GCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136 | || ||| || || ||| || || ||||| || ||||| ||||||||| | ||| Sbjct 1882199 GTTCGTGCCCGTGACCTTTTCCTTGCCCTTTGGATCCCCGATCTTTTCATGAAGCGCGTT 1882140 Query 112137 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC 112196 || ||| || | ||| | || | || || || || || || ||| |||| | Sbjct 1882139 GAAAAGAACGGTGACTGGACACTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTGC 1882080 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC- 112255 || ||||||||||| || || ||| |||||||||| | | || || | | || Sbjct 1882079 TACGGAGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAAGGCGGGTAAGG-GTC-GCA 1882022 Query 112256 -GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313 ||| | | || | || | ||||| | || ||||| || | || || ||||| || Sbjct 1882021 AGACCAT-CAAGGCTCAGAAGCTGTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGA 1881963 Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373 | |||| ||||| ||||| || ||||| |||| ||||| || |||||||| | ||| Sbjct 1881962 AACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGT 1881903 Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAAT 112405 ||| || |||||||| || || ||||| Sbjct 1881902 ACCATCCGAAGCTCCAACCTTTGCACTGAAAT 1881871 >seq667 Length=3682606 Score = 138 bits (152), Expect = 1e-27 Identities = 178/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| | ||||| | || |||| || || | |||||| || || ||||| || Sbjct 2045535 CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGA 2045476 Query 102150 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208 ||| | | | || | | | | ||||||| | || ||| | || || || |||||| Sbjct 2045475 TGGATCCAAGATAAGGACTCCT-CCTTTGCCCAACGTCTCGTTGCCTTCGCTGCTGTTGA 2045417 Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268 |||||||||||| ||| ||||| | |||| | |||||||||||||| |||||||| Sbjct 2045416 AGGTATCTTCTTCAGCGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 2045357 Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 102328 ||| ||||| ||||||||||||||| ||||||||||||||||| || ||| || || Sbjct 2045356 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTT 2045297 Query 102329 TGC 102331 ||| Sbjct 2045296 TGC 2045294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736875392640