Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq223 181 1e-40 seq667 113 5e-20 >seq223 Length=6419709 Score = 181 bits (200), Expect = 1e-40 Identities = 536/815 (66%), Gaps = 27/815 (3%) Strand=Plus/Plus Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | |||||| || || | |||||| || || || || | ||||||||||| Sbjct 1881861 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 1881920 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 ||||| |||||| |||||||||||||||||| | || | || ||||| ||||| | Sbjct 1881921 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 1881980 Query 106627 CTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCT 106682 || ||||| || | ||||| | || | | || | |||| ||| | || | ||| Sbjct 1881981 CTCAAGAATGGCGTACCACAGCTTCTGAGCCTTG----ATGGTCTTGCGACCCTTACCCG 1882036 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742 || |||||||||| ||| || || ||||||||||| || ||||| ||| || | Sbjct 1882037 CCTTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCTCCGTAGCAGTCGGCGAGGCCAG 1882096 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | || || || || | || | ||| | ||| || ||||| ||||||||||||| Sbjct 1882097 GGCACTCGTTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATGAAAA 1882156 Query 106803 GGTCTGGAATCCACAGGG-ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGG 106861 | || || ||||| |||| | | ||| || || | ||| |||| || | ||| ||| Sbjct 1882157 GATCGGGGATCCAAAGGGCAAGGAAA-AGGTCACGGGCACGAACCTCCTCCTTACCGTGG 1882215 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 || || | |||||||| || | || ||| | |||||| ||||| || |||| || Sbjct 1882216 TTCTTACGGAGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATGGCA 1882275 Query 106922 ATA------GATCCCTT-TCGACGCCCAG--CTTGATTTACATAGCGCGCTGTGGCGTTA 106972 | | | || ||| | | | ||| | |||| || || ||| ||| Sbjct 1882276 AAAGCACCGGGTCGCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTGTTG 1882335 Query 106973 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAG 107030 || || |||||||| |||| || ||| | ||| ||| || || || ||| || ||| Sbjct 1882336 AACACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAG 1882395 Query 107031 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTT 107090 | | || | | | || | | || |||||||| |||||| ||| ||||| Sbjct 1882396 --CCAGTAGCACGGATACGGTGCACATTCAGACCAATACCACCAGCCATCTTGGAGATCA 1882453 Query 107091 GCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAA 107150 ||||| | | ||||| | ||||| || | || ||| ||||| | | | | Sbjct 1882454 TGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACCA 1882513 Query 107151 GGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGT 107210 ||||||| |||| || || || || || || |||||||| || || | || | Sbjct 1882514 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGCAT 1882573 Query 107211 GAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTC 107268 | ||| | | |||| ||||||| | ||||||||||||||| || || || || Sbjct 1882574 GCGTGA--AGAACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATC 1882631 Query 107269 CCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || ||| || | | ||||||||| | ||||| Sbjct 1882632 ACCCCAGATACCAACAGACACACGCATGATCATGT 1882666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 503/790 (64%), Gaps = 26/790 (3%) Strand=Plus/Plus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610 |||| | |||||||||| ||| || |||| | || || |||||||| |||||| Sbjct 1880897 TCAACAGTGAACTGAATAGGGGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 1880956 Query 105611 TTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 105669 ||||| || | ||||| || || | |||||| | || |||| |||||| || Sbjct 1880957 TTGAGGCCAAGCTTCCA-GCCCGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 1881015 Query 105670 TTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCC 105727 | |||| | |||| ||| |||| | ||||||||| || || | || ||| Sbjct 1881016 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCGCCTCGATCAGCAGCC 1881073 Query 105728 ATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787 || | || ||| | | || ||||| || || || ||| ||||| ||| Sbjct 1881074 ATCTGAACGACCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGAGCCTTGACATCG 1881133 Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTGACCATGAGATCCTTC 105844 | ||||| | | || || ||||| ||||| | | || ||| || | | |||| Sbjct 1881134 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTC 1881190 Query 105845 ATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATC 105904 ||| | | |||||| ||||| || | || || |||| || ||||||| | Sbjct 1881191 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGATTGACAACC 1881250 Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964 ||||| || ||||| | | | ||||| || | |||||||| || ||||| Sbjct 1881251 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 1881310 Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 1881311 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 1881370 Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA---TCCCAGT--CGTAGTTGA 106079 ||||| | || | | ||||| ||||| ||| | ||||||| | || | | Sbjct 1881371 TTACGGATGCCGTGTGTCTTGA---CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 1881427 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139 | || || || || |||||||||||| || || | || | ||| ||||| ||||||| Sbjct 1881428 G-AGGGCTTGACGTT-CCACATATCAAACTGGAGGATACCCTCGGAGGTGGGGGAACCCT 1881485 Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCA-ATTCACAGCTCGCCTCCAGGGATGCG 106198 || || |||| ||| | ||| |||| | ||| | || || | || Sbjct 1881486 TGAAGGTGGAGTAGGGACCCTCCTCTTTGGCCAGCTGCAC-GGAGGCAGTGAGAGCAGCA 1881544 Query 106199 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 106258 ||||| ||||| |||||||| | || | ||| || || ||| || || | | Sbjct 1881545 TGATAAATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAA-GGG 1881603 Query 106259 TAGCGGCACA-AAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 | ||| | || || |||| || || || |||||||| | |||||| |||| ||| Sbjct 1881604 CATACGCAGAGCAAGGAAAGCATCAGCCAGGCCCTGAACACCAAGACCAATGGGTCGGTG 1881663 Query 106318 TCGCATATTA 106327 ||||| ||| Sbjct 1881664 GCGCATGTTA 1881673 >seq667 Length=3682606 Score = 113 bits (124), Expect = 5e-20 Identities = 330/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct 2045006 TAGTCGGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 2045065 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 117100 ||||| || || || | || || | | | | || |||| |||| Sbjct 2045066 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 2045120 Query 117101 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT 117160 ||||||| | || |||||||||||| ||| ||||||||||| |||| ||| Sbjct 2045121 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 2045180 Query 117161 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 ||| || || || || || |||| | | |||||| || || || | | ||| Sbjct 2045181 CACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTGATGATAT 2045240 Query 117221 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 117277 | ||||| | | | ||| | | || | || | || ||| || ||||| Sbjct 2045241 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 2045297 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| |||||||| || || || || || || || |||||| || || |||| Sbjct 2045298 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCA 2045357 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 ||||||| |||||||| | ||| | |||| | ||| | ||| |||||||||||| | Sbjct 2045358 TGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCGCTGAAGAAGATACCTT 2045417 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCAT 117456 | ||| || || |||| || || | ||| |||||| ||| | || | | | |||| Sbjct 2045418 CAACAGCAGCGAAGGCAACGAGACGTTGGGCAAAGGAG-GAGTCCTTATCTTGGATCCAT 2045476 Query 117457 TTCATTGCCCATTTCGCCTTCTT 117479 || ||||| | |||||||| Sbjct 2045477 CGGATGGCCCAGTCAGCCTTCTT 2045499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975549170880