Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq556 102 9e-17 >seq556 Length=5145791 Score = 102 bits (112), Expect = 9e-17 Identities = 323/492 (66%), Gaps = 21/492 (4%) Strand=Plus/Plus Query 154629 CAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA--ATCCAAGCATACC 154686 || || ||| | || | |||||||||| ||| || || | || ||| | || |||| Sbjct 3323848 CAGCCCAACTCTGGTGCTCAGGGTGAGTTTGCCGGTCT--TCGCTGTATCAAGGCCTACC 3323905 Query 154687 ATCAAGGATCAGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGA 154745 | | ||| || || | ||||| |||| || || | || || | || || || || Sbjct 3323906 A-CGAGGCTCGTGATGGAGATAAGCGAAAGGTCTGCCTTATCCCTGTTTCTGCTCACGGT 3323964 Query 154746 ACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATG-- 154803 || || |||||| ||||| |||||| || ||||| ||||| |||||||||||| | Sbjct 3323965 ACCAACCCTGCTTCTGCTGCCATGGCTGGTATGAAGGTTGTTACTGTCAAGTGTGACGGC 3324024 Query 154804 ATGA-TGGTAACATAGACATCAAAGATCTAGAG---AAGAAAGC-AATCATGA--ATACA 154856 | || ||||||| | || ||| | ||||| || ||| || || || | || Sbjct 3324025 AAGACTGGTAACCTGGATATCGAGGATCTCAAGGCCAAGTGTGCCAAGCACGCTGATGAG 3324084 Query 154857 TTTGAACTG----TCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAAC 154912 ||| ||| | ||| |||| || || ||||| ||||| || || | Sbjct 3324085 CTTG--CTGCNNNNNNNNNNTCATGGTTACTTATCCCTCTACTTTCGGTGTCTTCGAGCC 3324142 Query 154913 TAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGG 154972 | | |||| || | ||| | | || || || |||| |||| || || | || || Sbjct 3324143 TGAGATTAAGCAAGTCTGTGATCTTGTCCACGAGCATGGCGGTCTTGTCTACATGGACGG 3324202 Query 154973 AGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATG 155032 || || | || || ||| | || || | || |||| |||||| ||||| || Sbjct 3324203 TGCCAACATGAACGCTCAGATTGGTCTCTGCAGCCCCGGTGACATTGGTGCCGATGTCTG 3324262 Query 155033 TCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGG 155092 ||||| ||| | || || || ||||||||||| || || ||||| ||||| ||||| || Sbjct 3324263 CCATCTCAACCTCCACAAGACCTTCTGTATTCCCCACGGCGGTGGTGGTCCCGGCGTTGG 3324322 Query 155093 TCCTATAGGTGT 155104 ||||| | ||| Sbjct 3324323 CCCTATCGCTGT 3324334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207645006080