Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq556 111 2e-19 >seq556 Length=5145791 Score = 111 bits (122), Expect = 2e-19 Identities = 325/492 (66%), Gaps = 21/492 (4%) Strand=Plus/Plus Query 159304 CAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA--ATCCAAGCATACC 159361 || || ||| | || | |||||||||| ||| || || | || ||| | || |||| Sbjct 3323848 CAGCCCAACTCTGGTGCTCAGGGTGAGTTTGCCGGTCT--TCGCTGTATCAAGGCCTACC 3323905 Query 159362 ATCAAGGATCAGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGA 159420 | | ||| || || | ||||| |||| || || | || || | || || || || Sbjct 3323906 A-CGAGGCTCGTGATGGAGATAAGCGAAAGGTCTGCCTTATCCCTGTTTCTGCTCACGGT 3323964 Query 159421 ACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATG-- 159478 || || ||||| || || | ||||| || ||||| ||||| |||||||||||| | Sbjct 3323965 ACCAACCCTGCTTCTGCTGCCATGGCTGGTATGAAGGTTGTTACTGTCAAGTGTGACGGC 3324024 Query 159479 ATGA-TGGCAACATAGACATCAAAGATCTAGAG---AAGAAAGC-AATCATGA--ATACA 159531 | || ||| ||| | || ||| | ||||| || ||| || || || | || Sbjct 3324025 AAGACTGGTAACCTGGATATCGAGGATCTCAAGGCCAAGTGTGCCAAGCACGCTGATGAG 3324084 Query 159532 TTTGAACTG----TCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAAC 159587 ||| ||| | ||| |||| ||||| ||||| ||||| || || | Sbjct 3324085 CTTG--CTGCNNNNNNNNNNTCATGGTTACTTATCCCTCTACTTTCGGTGTCTTCGAGCC 3324142 Query 159588 AAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGG 159647 | || | || | ||| | |||| || ||| |||| |||| || || | || || Sbjct 3324143 TGAGATTAAGCAAGTCTGTGATCTTGTCCACGAGCATGGCGGTCTTGTCTACATGGACGG 3324202 Query 159648 TGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATG 159707 ||| || | || || ||| | ||||| | || ||||| |||||| ||||| || Sbjct 3324203 TGCCAACATGAACGCTCAGATTGGTCTCTGCAGCCCCGGTGACATTGGTGCCGATGTCTG 3324262 Query 159708 TCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGG 159767 ||||| ||| | || ||||| ||||||||||| || || ||||| ||||| ||||| || Sbjct 3324263 CCATCTCAACCTCCACAAGACCTTCTGTATTCCCCACGGCGGTGGTGGTCCCGGCGTTGG 3324322 Query 159768 TCCTATTGGTGT 159779 ||||| | ||| Sbjct 3324323 CCCTATCGCTGT 3324334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588045966344320