Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq223 304 2e-77 seq667 192 1e-43 >seq223 Length=6419709 Score = 304 bits (336), Expect = 2e-77 Identities = 1217/1891 (64%), Gaps = 92/1891 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| || || || ||||||||||||||||| Sbjct 1880900 ACAGTGAACTGAATAGGGGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTG 1880959 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669 ||||| ||| |||||| | |||||| |||| |||| | || | Sbjct 1880960 AGGCCAAGCTT---CCAGCCCGCAAAGTGCATACTGGTGA---TCTTGCCC---ATCGTG 1881010 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 |||| | | |||| | |||||| ||||| ||| || ||||| | | | Sbjct 1881011 GGGTCCTTCATGTGG---------ATGTTCAGTGACTGGGACTGATCAATGAAGGCGCCT 1881061 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | ||||| ||||| | | || | | ||| || | |||||| || ||||| | | Sbjct 1881062 CGATCAGCAGCCATCTGAACGACCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGA 1881121 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC 212849 | |||| || | |||| | ||| |||||||| | || || || ||||| Sbjct 1881122 GCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACC-------ATTCTCAGC 1881174 Query 212850 --TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCA 212901 || | ||| ||| | ||| ||| || ||| || | ||| ||||| || Sbjct 1881175 AATG-ATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCA 1881233 Query 212902 GGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAG 212961 | || ||||| | |||||| ||||| | ||| || | | ||||| | || || | Sbjct 1881234 GCCAGGGATTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGG 1881293 Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021 |||||||||||| || ||||||||| ||||||||||| | || ||||| || ||||| | Sbjct 1881294 TGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAG 1881353 Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CGAAGC-TCT 213077 |||| | || |||||||| | | ||||| | | ||| | ||||| ||| Sbjct 1881354 GAGCAAGGAGCAGACTGTTACGGATGCCGTGT--GTCT-TGACTTCCTCTCGAAGAGTCT 1881410 Query 213078 GCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAG 213137 |||||||||| | |||| | ||| ||||||||||| |||||||| | | Sbjct 1881411 -CCCAGTCCCAGAGGTCAGAGGG---------CTTGACGTTCCACATATCAAACTGGAGG 1881460 Query 213138 ATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGC 213197 || || | | |||| |||| | | | ||||||||| || | ||| ||||||||| Sbjct 1881461 ATACCCTCGGAGGTGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCTTTGGCCAGC 1881520 Query 213198 TCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTT 213256 | ||| ||| || || ||||| | || ||||| ||||| |||| | ||||||||| Sbjct 1881521 T-GCACGGAGGCAGTGAGAGCAGCATGATAAATGGTCTCAAAGATCTGCTTGTTGAGCTC 1881579 Query 213257 CTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTG 213316 ||||| || ||| ||||||||| || |||| |||||||||| ||||| Sbjct 1881580 ACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCAGCCAGGCCCTG 1881639 Query 213317 GACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGT 213375 || || | || ||||||| ||| | || |||| ||| |||| ||||| | |||| Sbjct 1881640 AACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGGACAGGGT 1881698 Query 213376 AAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA-CATGGGCC 213434 | ||| |||||||||||||| |||||||| | | || | ||| | || || Sbjct 1881699 AGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCCTGTGCN 1881758 Query 213435 AGGTACTCG-TGATTGAACACGTAGC------CCCCGTCCTGCACAAACTCAGGCAGGGC 213487 | ||||| |||||| | ||| | | || || || | Sbjct 1881759 NNNNNNNNNCTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAGGAGGGTAGAGA 1881818 Query 213488 GATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGT 213547 | ||| |||||||| || || ||||| | || | | |||||| || || || || Sbjct 1881819 CAGAGAGGCGAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGT 1881878 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-G 213606 ||| |||||| || ||||||||| || ||||||| ||| ||| ||||| | ||| | Sbjct 1881879 GCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG-TTGCTCTTGCGGTTGCAGG 1881937 Query 213607 AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCC 213666 |||||||||||||||| | ||| |||||||| ||||| | | || || | || Sbjct 1881938 CATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACC 1881997 Query 213667 AGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGT 213726 | || | | ||||||| | | ||| | | || | |||||||| ||||| Sbjct 1881998 ACAGCTTCTGAGCCTTGATGGTCTTGC-GACCCTTACCCGCCT--TCTCGTACTTTTCGT 1882054 Query 213727 AGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACA 213786 | || | | || || | || || | | || || || || || |||| Sbjct 1882055 ACAGAGCCTCAAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACA 1882114 Query 213787 TGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846 | || ||||||| |||| | | || | || |||||| || || |||| ||| || | Sbjct 1882115 TCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATGAAAAGATCGGGGATCCAAAGGG 1882174 Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906 | ||| ||||| | || | ||| ||| || ||| || || ||||| || | Sbjct 1882175 CAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGA 1882234 Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCT 213963 | || |||| || | |||||| ||||| | |||||||||||| || || | || | | Sbjct 1882235 ATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGT 1882294 Query 213964 TGCCGCCCTGG--TCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTA 214017 |||| |||||| | | | | || ||||||| | || || | || | Sbjct 1882295 TGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTGTTGAACACACGAAGCATAGGAA 1882354 Query 214018 CCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGT 214074 | | ||||| || ||| |||||||| || || || || ||||| | || | | | Sbjct 1882355 CAACACCGTTCGA-TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGG 1882413 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 ||| ||| ||| || || ||||| || ||||||||||||||| ||| | | | || Sbjct 1882414 TGCACATTCAGA--CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAG 1882471 Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194 | || ||| || | || |||||||| | | | | ||||||||| || | | Sbjct 1882472 TATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACCAAGAAGCAAGATGACAATT 1882531 Query 214195 GGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAG 214254 ||||| | | ||| | |||||| ||||||||| ||||| | | |||||| | | Sbjct 1882532 GGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTGG 1882591 Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAG-CG 214313 | | || |||| ||||||| |||| ||| || | ||| | || | Sbjct 1882592 ACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACA 1882651 Query 214314 CACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGC--CCTTGAGCAGGT 214371 || | ||| | ||||||||| || | ||| | ||| | | |||||| |||| Sbjct 1882652 CA-CGCATGATCATGTGCTGAGGGCGCTCGA--CAATCTTACCGTCAATCTTGAGGAGGT 1882708 Query 214372 AGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 | || ||||||| ||||||||| |||||||| Sbjct 1882709 ATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1882739 >seq667 Length=3682606 Score = 192 bits (212), Expect = 1e-43 Identities = 489/735 (67%), Gaps = 23/735 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || ||| ||||||||||| Sbjct 2045002 CTGGTAGTCGGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 2045061 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA-GCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | || | | Sbjct 2045062 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCT-TCTCGTTGCCAAGAGCGACAAGGA 2045120 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||| ||||| | ||||||| ||||||||| | ||||| Sbjct 2045121 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 2045180 Query 48018 ACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| || || ||||| ||||| ||||||| ||| || ||||| || | || Sbjct 2045181 -CACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTGATGATA 2045239 Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCA 48128 | || || | |||| ||| || ||| | | ||| | | ||| | Sbjct 2045240 TCCT------GGATCATCTGC----TTGCTG-GCACGACCCTTGAGGTGAGAGTGGAGGA 2045288 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||||||||| |||| | || ||||| || ||||||| ||||||||||| | Sbjct 2045289 GGCAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCA 2045348 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||| ||||||| || | || ||||||||||| || | ||||| | || ||||| Sbjct 2045349 GACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCGCTGAAGA 2045408 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| || || || || ||||| || ||| | | | || || | || ||| ||| Sbjct 2045409 AGATACCTTCAACAGCAGCGAAGGCAACGAGACGTTGGGCAAAGGAGGAGTCCTTATCTT 2045468 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | |||||||| |||||||| |||||| || || ||||| ||||| Sbjct 2045469 GGATCCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGT 2045528 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 |||||| | | | || | | ||| | ||||| || || | ||| Sbjct 2045529 TGAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATTAGGAGGGAGTAGG 2045588 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||| ||||||||| | ||||| | Sbjct 2045589 TCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGA 2045648 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || ||| | ||| | || ||||| ||||| || ||||| || |||| Sbjct 2045649 TCTGGACCTCGCCACTGAAACGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAG 2045708 Query 48549 CAAAGAAGGCAAGGA 48563 | ||||| ||||||| Sbjct 2045709 CGAAGAAAGCAAGGA 2045723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524509358080