Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq223 194 3e-44 seq667 174 3e-38 >seq223 Length=6419709 Score = 194 bits (214), Expect = 3e-44 Identities = 831/1292 (64%), Gaps = 61/1292 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || || ||||| || || ||||||||||||||| ||||||||| ||| | |||||||| Sbjct 1881533 GTGAGAGCAGCATGATAAATGGTCTCAAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 1881591 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||||||||||||||| | | ||||| | || ||||| ||||| || || | | Sbjct 1881592 TGACTCGAAGGGCATACGCAG-AGCAAGGAAAG-CATCAGCCAGGCCCTGAACACCAAGA 1881649 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||| | | |||| | ||| | || |||| || || || ||| | Sbjct 1881650 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 1881707 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG- 221650 | ||||| | ||||| ||||| || | | || | | ||| | | Sbjct 1881708 CATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCCTGTGCNNNNNNNNNN 1881767 Query 221651 -TGATTGAACACCAA-CTCGCCGC--CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGC 221706 | ||||| | | | ||| | ||| || || | || | | ||| | Sbjct 1881768 CTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATG---------AAGGAGGGTAGAGA 1881818 Query 221707 AACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGT 221766 | ||| ||||| || || || |||||||| | |||| || || || || Sbjct 1881819 CAGAGAGGCGAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGT 1881878 Query 221767 ACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC 221826 || |||||| || |||||| || |||| || || || |||||| ||| || Sbjct 1881879 GCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGC 1881938 Query 221827 GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886 |||||||||||||| || || || ||||| ||| ||| | ||||| || ||| Sbjct 1881939 ATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCA 1881998 Query 221887 GAGTTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACC 221939 || | |||| || | | ||| | ||| | || |||| |||||| ||| Sbjct 1881999 CAGCT-TCTGAGCCTTGATGGTCTTGCGACCCTTACCCGCCTTCTCGTACTTTTCGTAC- 1882056 Query 221940 CGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGG 221999 ||||| | |||||| || ||||| ||| | ||||| || ||| | | Sbjct 1882057 ------AGAGCCT--CAAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTAG 1882108 Query 222000 GACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCC 222059 | |||||||| |||||| ||| | || || | || |||||| || || ||||||| Sbjct 1882109 GGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATGAAAAGATCGGGGATCC 1882168 Query 222060 ACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGAT 222119 | || || | || || || | || || ||||||| |||| ||| || | |||| Sbjct 1882169 AAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACCGTGGTTCTTACGGAGAT 1882228 Query 222120 CCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTC 222179 | | || || || | || | |||||| ||||| || |||| ||| | ||| ||||||| Sbjct 1882229 CAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTC 1882288 Query 222180 GCTTGTTGCCACCCTG-----ATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGG 222233 |||||||||||||||| ||| | ||| | |||||| | ||||| Sbjct 1882289 GCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTGTTGAACACACGAAGCA 1882348 Query 222234 TCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA 222293 | || || | ||||| ||| ||||||||| || ||||| | || || | Sbjct 1882349 TAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCAC--- 1882405 Query 222294 GGTTACTG-GCAGA--CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCT 222350 || ||| | ||| | || || |||||||| || || ||||||||||| ||| ||| Sbjct 1882406 GGATACGGTGCACATTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT 1882465 Query 222351 TGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACG 222410 ||||||| || ||| ||||| ||| ||| ||||| | | | || || ||||| | Sbjct 1882466 TGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACCAAGAAGCAAGATG 1882525 Query 222411 ACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC 222470 ||| || | | | || | |||||| || |||||||| || || || ||| | Sbjct 1882526 ACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACT 1882585 Query 222471 CCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGA-ATCTG 222528 || |||||||||| ||| ||||| | ||||| |||| | || ||| || | | Sbjct 1882586 TGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAA 1882645 Query 222529 CATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAG 222586 || | | || | |||| ||||| ||| || | ||| ||| || | | || | Sbjct 1882646 CA-GACACA-CGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCT--TG 1882701 Query 222587 AGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCG 222646 || ||||| ||| |||| ||||||||| |||||||| | | | || || | | | Sbjct 1882702 AGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCA 1882761 Query 222647 TGAACCACGGCGGCGTCCAGCTCCGACTTGTG 222678 | ||| | ||| | ||||| |||| ||| || Sbjct 1882762 TAAACAATGGCAGAGTCCAACTCCTCCTTATG 1882793 >seq667 Length=3682606 Score = 174 bits (192), Expect = 3e-38 Identities = 383/571 (67%), Gaps = 11/571 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || |||||| || || ||||||||||| Sbjct 2045847 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 2045788 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 |||| || | ||| |||| || || || | || |||||| || || Sbjct 2045787 TCCAAAGATCTCCACGACTGGAACAACCGC-CTGACTGCTGATGAGCAGTTCTTCGTCTC 2045729 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || |||||||||||||| || |||||||| || |||| | Sbjct 2045728 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 2045669 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || || ||| | ||||| || |||||||| |||||||| || Sbjct 2045668 TTTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 2045609 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || || || || || || ||||| | || Sbjct 2045608 GGAGAACATTCACTCCGAGACCTACTCC---CTCCTAATCGACACCTACATCAAGGAGCC 2045552 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||| || || || || ||||| ||| ||| ||| ||||| | |||||| Sbjct 2045551 CGCCCAGCGAACCTACCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGC 2045492 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||||| |||||| | || | | | |||| | | || || || || Sbjct 2045491 TGACTGGGCCATCCGATGGATCCAAGATAAGGACTCCTCCTTTGCCCAACGTCTCGTTGC 2045432 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||| |||||||| || || ||||| ||||||||| | || || | |||||||||||||| Sbjct 2045431 CTTCGCTGCTGTTGAAGGTATCTTCTTCAGCGGTGCCTTCGCCTCTATCTTCTGGCTCAA 2045372 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || ||||||||| ||| ||| ||||||||||||||| | |||||||| Sbjct 2045371 GAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGG 2045312 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| |||| || ||||||||||| ||| || Sbjct 2045311 TCTTCACACTGACTTTGCCTGCCTCCTCCAC 2045281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928836533281280