Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq556 104 3e-17 >seq556 Length=5145791 Score = 104 bits (114), Expect = 3e-17 Identities = 340/521 (65%), Gaps = 17/521 (3%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| | ||||| || ||||| ||||| ||||| || || ||||||||||| ||||| || Sbjct 3324334 ACAGCGATAGGGCCAACGCCGGGACCACCACCGCCGTGGGGAATACAGAAGGTCTTGTGG 3324275 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || ||||| || ||||| |||||| ||||| || | ||||| | ||| || Sbjct 3324274 AGGTTGAGATGGCAGACATCGGCACCAATGTCACCGGGGCTGCAGAGACCAATCTGAGCG 3324215 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || | || || |||| |||| || || || | | ||| | Sbjct 3324214 TTCATGTTGGCACCGTCCATGTAGACAAGACCGCCATGCTCGTGGACAAGATCACAGACT 3324155 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT-AATACATGA 138421 || | || | | || || ||||| ||| || ||||| |||| ||| | Sbjct 3324154 TGCTTAATCTCAGGCTCGAAGACACCGAAAGTAGAGGGATAAGTAACCATGANNNNNNNN 3324095 Query 138422 GAGTTCAAATGTATTCA---TGATT-GCTTTCTT---CTCTAGATCTTTGATGTCTATGT 138474 | || | ||| || || || ||| || ||||| | ||| || | || Sbjct 3324094 NNGCAGCAAGCTCATCAGCGTGCTTGGCACACTTGGCCTTGAGATCCTCGATATCCAGGT 3324035 Query 138475 TGCCA-TCAT--CATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAG 138531 | ||| || | | |||||||||||| ||||| ||||| || |||||| | ||| || Sbjct 3324034 TACCAGTCTTGCCGTCACACTTGACAGTAACAACCTTCATACCAGCCATGGCAGCAGAAG 3323975 Query 138532 CAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCT 138590 |||| || || || || || || | || || || || || |||| ||||| | || Sbjct 3323974 CAGGGTTGGTACCGTGAGCAGAAACAGGGATAAGGCAGACCTTTCGCTTATCTCCATCAC 3323915 Query 138591 GATCCTTGATGATATGCTTGGAT--TGCTAACAGTCCTGCATACTCACCCTGTGATCCTG 138648 || ||| | || || || | ||| || | || || ||| |||||||||| | || | Sbjct 3323914 GAGCCTCG-TGGTAGGCCTTGATACAGCGA--AGACCGGCAAACTCACCCTGAGCACCAG 3323858 Query 138649 CGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCA 138689 ||| || || | | ||| || | ||| ||||| ||| Sbjct 3323857 AGTTGGGCTGAAGAGTGGTAGCGTCCATACCAGTGATCTCA 3323817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578993246914240