Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq223 165 1e-35 seq667 113 5e-20 >seq223 Length=6419709 Score = 165 bits (182), Expect = 1e-35 Identities = 539/823 (65%), Gaps = 27/823 (3%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || | | || ||| || || || || || || Sbjct 1882674 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGT 1882615 Query 75271 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 75328 ||||||||||||| | ||||||| |||| | | ||| || || | || || ||| Sbjct 1882614 CTTGGAGACATACAATCTGATGTCCAGCAAGTTCT--TCACGCATGCTTCCCCCACGCTC 1882557 Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||||| || || || || || || |||| ||||||| | | | | ||||| Sbjct 1882556 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAT 1882497 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 1882496 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1882437 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 75506 || |||||||| || | | || | | | || | | ||| || ||| || | Sbjct 1882436 GGTGGTATTGGTCTGAATGTGCACCGTATCCGTGCTACTGG--CTCATACATCGCCGGTA 1882379 Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 | || ||| ||| | ||| || |||| |||||||| || || ||| ||| || || | Sbjct 1882378 CCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTGTTCAACAACACTGCTCGGT 1882319 Query 75567 ATGTAAAT-----CAAGCGGGGCGTC--GCAAGG-GGTCCATC-GCGGTCTACTTGGAAC 75617 ||| | || | ||| | || | ||| | | || ||||| | || | Sbjct 1882318 ATGNNNNNNNNNNCCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGC 1882259 Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGG 75677 | ||||| ||||| || | || |||||||| | || ||||| ||| | || |||| Sbjct 1882258 CTTGGCACTCCGATGTCTTCGAATTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGG 1882199 Query 75678 CTCGGTGTAGAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 ||| | || || ||| | | |||| ||||| || || |||||||||||||| ||| Sbjct 1882198 TTCGTGCCCGTGACCT-TTTCCTTGCCCTTTGGATCCCCGATCTTTTCATGAAGCGCGTT 1882140 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 || || ||| | ||| | || | || || || || || || ||| ||||| Sbjct 1882139 GAAAAGAACGGTGACTGGACACTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTGC 1882080 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAAT 75853 || ||||||||||| || || ||| |||||| || ||| ||||| | ||| Sbjct 1882079 TACGGAGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAAGGCGGGTAAGGGTCGCAA- 1882021 Query 75854 GCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 ||| | | || | | || | | ||| | || ||||| | | ||||| ||||| || Sbjct 1882020 --GACCAT-CAAGGCTCAGAAGCTGTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGG 1881964 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 || |||| ||||| ||||||||||| || ||| ||||| ||||||||||| | || Sbjct 1881963 AAACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 1881904 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 || ||| ||||| || |||||||| |||||| | |||||| Sbjct 1881903 TACCATCCGAAGCTCCAACCTTTGCACTGAAATTATCGAGTAC 1881861 Score = 96.9 bits (106), Expect = 4e-15 Identities = 381/590 (65%), Gaps = 16/590 (3%) Strand=Plus/Minus Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC 76442 ||||||| ||| | ||| | || | || ||||||||||||||| || || || || | Sbjct 1881485 AGGGTTCCCCCACCTCCGAGGGTATCCTCCAGTTTGATATGTGG-AACGTCAAGCCCT-C 1881428 Query 76443 TCAACTACG--ACTGGGA---TGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 76497 | | || | ||||||| | ||| ||||| ||||| | || | ||||| Sbjct 1881427 TGACCTCTGGGACTGGGAGACTCTTCGAGAGGAAG---TCAAGACACACGGCATCCGTAA 1881371 Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 |||||| | | || || ||||| || ||| ||| | || || |||| || || || Sbjct 1881370 CAGTCTGCTCCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGA 1881311 Query 76558 ATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGT 76617 ||||| || || ||||| | || ||||||| | | ||||| |||||||| Sbjct 1881310 GTGCTTCGAGCCCTACACCTCCAATATCTACCAACGCCGTGTTCTCGCTGGTGAGTTCCA 1881251 Query 76618 CATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATAT 76677 ||||||| || |||| ||||| | || ||||| |||||| | | ||| Sbjct 1881250 GGTTGTCAATCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTAT 1881191 Query 76678 GAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGA 76737 |||| | | ||| | | | |||||||||||| || || | | ||||| | || Sbjct 1881190 GAAGAACCGCATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGA 1881131 Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGC 76797 | ||||| ||| || || || ||||| || | | ||| || | ||||| Sbjct 1881130 TGTCAAGGCTCTGTATAAGACTGTTTGGGAGATTTCTCAGCGCCAGGTCGTTCAGATGGC 1881071 Query 76798 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGT 76855 || ||||| || ||||||||||| |||| ||| |||| | |||| | Sbjct 1881070 TGCTGATCGAGGCGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAGGAC 1881013 Query 76856 CCAACGATGTCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAAC 76914 || |||||| |||| || | |||||| | || || ||||| | || ||||| || Sbjct 1881012 CCCACGATGGGCAAGATCACCAGTATGCACTTTGCGGGC-TGGAAGCTTGGCCTCAAGAC 1880954 Query 76915 CGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 ||| |||||||| || || || |||| || || |||||||||| Sbjct 1880953 CGGCATGTACTACCTTCGTACACAGGCTGCTGCTGCCCCTATTCAGTTCA 1880904 >seq667 Length=3682606 Score = 113 bits (124), Expect = 5e-20 Identities = 330/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || |||| | | | || | ||| |||||| ||| | || Sbjct 2045499 AAGAAGGCTGACTGGGCCATCCGATGGATCCAAGATAAGGACTC-CTCCTTTGCCCAACG 2045441 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || |||| || || ||| || |||||||||||| ||| | ||| | |||| | Sbjct 2045440 TCTCGTTGCCTTCGCTGCTGTTGAAGGTATCTTCTTCAGCGGTGCCTTCGCCTCTATCTT 2045381 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || |||||| || || || || || || Sbjct 2045380 CTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 2045321 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAA---TAG 65258 || |||||||| ||| || |||||| || ||| || | || | || | | Sbjct 2045320 TGACGAGGGTCTTCACACTGACTTTGCC-TG--CCTCCTCCACTCTCACCTCAAGGGTCG 2045264 Query 65259 ACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 ||| | | | ||||| | ||| | | || || || |||||| | | ||| Sbjct 2045263 TGCCAGCAAGCAGATGATCCAGGATATCATCACTGACGCCGTCACCATTGAGCAGGAGTT 2045204 Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTA 65378 | || || || || || ||| ||| |||| ||||||||||| ||| |||| Sbjct 2045203 CCTCACTGAGGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTA 2045144 Query 65379 CATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCA-----TTTGG 65433 |||||||| || | ||||||||||| |||| || | | | | Sbjct 2045143 CATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGG-----CAACGAGAAGGTCTAC 2045089 Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 || || | || || || ||||| ||||| ||||| ||| | || |||||||||||| Sbjct 2045088 AAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTC 2045029 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| |||| ||||| Sbjct 2045028 TTCGAGAAGCGCGTTGCCGACTA 2045006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564290530560