Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq556 86.0 1e-11 >seq556 Length=5145791 Score = 86.0 bits (94), Expect = 1e-11 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || || || ||||||| || | ||| || ||| || Sbjct 1548820 AATTTGCATACCACCACGAAGGCGGAGAACGAGATGCAGAGTGGACTCCTTCTGAATGTT 1548879 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | || || | || || ||||| || || || | || || Sbjct 1548880 GTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTG 1548939 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||||| || || || ||||| || || |||| || | || ||||| ||||| Sbjct 1548940 GTCAGGAGGGATACCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGA 1548999 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || || || || || || || || || || ||||| || ||||| Sbjct 1549000 AGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACAAAGATCTGCAT 1549056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899646393075840