Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq223 149 2e-30 seq667 140 1e-27 seq445 107 6e-18 seq112 98.7 3e-15 >seq223 Length=6419709 Score = 149 bits (164), Expect = 2e-30 Identities = 592/921 (64%), Gaps = 33/921 (4%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||| ||||| || || |||||| || | ||||| ||||| Sbjct 1881861 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 1881920 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 1881921 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 1881980 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTG----TATCTGCCTT 155805 || ||||| ||| || | | || || || |||| || | ||||| Sbjct 1881981 CTCAAGAATGGCGTACCACAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTACCCGCCTT 1882040 Query 155806 CCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCC 155863 | || || |||| || | ||| | | ||||| ||||| || || || || Sbjct 1882041 C----TCGTACTTTTCGTACAGAGCCTCAA--ACTCCTCTCCGTAGCAGTCGGCGAGGCC 1882094 Query 155864 AGGGCACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCAT 155920 |||||||| | ||||| | ||| | ||| | || || | | | |||| ||| Sbjct 1882095 AGGGCACTCGTTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAA---CGCGCTTCAT 1882151 Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980 || | ||| ||||| ||| ||||||||| | || |||||| | || Sbjct 1882152 GAAAAGATCGGGGATCCAAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACC 1882211 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||| ||||| || || || | |||||| | ||| | || ||||| || || || Sbjct 1882212 GTGGTTCTTACGGAGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGAT 1882271 Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTG------ATCTACATACCGAGCAGTCTT 156091 |||||| ||| | |||| |||||||| ||||||||||||| || Sbjct 1882272 GGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTT 1882331 Query 156092 ATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATG 156151 ||||| |||| |||||||||| || ||| || || || || ||||| ||| || | Sbjct 1882332 GTTGAACACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTA 1882391 Query 156152 CGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAA 156210 || |||| | || | | || | || || ||||||||||| | |||| || || | Sbjct 1882392 TGAGCCAGTAGCACGGATACGGTGCACATTCAGACCAATACCACCAG-CCATCTTGGAGA 1882450 Query 156211 TTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGAT 156269 | || || ||| | ||||| | | || || |||||| ||||| | ||| | | Sbjct 1882451 TCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAA 1882510 Query 156270 AGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTT 156329 ||| |||| || ||||| || | || || || |||||||| || || || | Sbjct 1882511 CCAAGA-AGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAA 1882569 Query 156330 GCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA 156389 ||||| | || |||| | ||||| || |||||||||| | ||| | || | Sbjct 1882570 GCATGCGTGAAGAACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCA 1882629 Query 156390 -GACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCAC 156448 |||| | |||| | ||| || | ||| ||| |||||||| ||||| |||||| Sbjct 1882630 TCACCCCAG-ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTT 1882688 Query 156449 TCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAG 156508 || ||||| || ||||||| || |||| ||| || || || || || | | | Sbjct 1882689 ACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTG 1882748 Query 156509 AAAATCACGGTTGTAATCAAT 156529 ||||| |||| ||| |||| Sbjct 1882749 GAAATCGCGGTCATAAACAAT 1882769 >seq667 Length=3682606 Score = 140 bits (154), Expect = 1e-27 Identities = 245/354 (69%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || ||| ||| || || | ||||| |||||| || || || || || | Sbjct 2045645 CCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACCT 2045586 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424 | || ||||| || || |||||||| || ||| |||| | | || ||||||| Sbjct 2045585 ACTCCCTCCTAATCGACACCTACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTCAACG 2045526 Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||||| | || |||| || || |||||| |||||||||| || ||||||||| Sbjct 2045525 CCATT-GAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCAA 2045467 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 || ||| | ||||| ||||||||||| || |||| || || || || || Sbjct 2045466 GATAAGGACTCCTCCTTTGCCCAACGTCTCGTTGCCTTCGCTGCTGTTGAAGGTATCTTC 2045407 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||||| ||||| ||| |||||| || ||||| || ||||||||| | | || || ||| Sbjct 2045406 TTCAGCGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTG 2045347 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || || ||||| || || || | ||||||| |||||||| || |||||| Sbjct 2045346 ACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCC 2045293 >seq445 Length=5615321 Score = 107 bits (118), Expect = 6e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | || || Sbjct 5008842 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 5008783 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | ||||||||||||||| |||||||| ||||| Sbjct 5008782 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAT 5008723 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || ||||||||||| ||||| | ||||||| |||| || || || Sbjct 5008722 CGGAGACCACCATCACGAGCACGACCCTCGACAGGTTGTCGGGT 5008679 Score = 86.0 bits (94), Expect = 2e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||||||||||||||||||||||||||||||| || | || |||||||||||| Sbjct 5008764 GCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAATCGGAGACCACCATCACGA 5008705 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATT 233391 | | ||||| ||| | ||| || || | | | | | |||||| |||||||| | Sbjct 5008704 GCACGACCCTCGACAGGTTGTCGGGTCATGATCTGAAC-TGGACCACGAGCACGAGCGTG 5008646 Query 233392 AATTTTATCTTTAACCATATG 233412 ||| || || | ||||| || Sbjct 5008645 AATCTTGTCGTCCACCATGTG 5008625 >seq112 Length=5402168 Score = 98.7 bits (108), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| | ||| || |||||| | || ||||| |||||||| |||||||| Sbjct 4982032 AGAATTTCTTTGAGACGCGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 4982088 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||||| |||||||||||| || || || | Sbjct 4982089 AAATGGAAGGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 4982148 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 4982149 ACACCAACCATTTCACCAGG 4982168 Score = 98.7 bits (108), Expect = 3e-15 Identities = 187/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| || || ||||||||||| || ||| | || || || || Sbjct 4982809 TCTTCCAGAGCCTTGACCAATCGTCGCTGAATATACCCTGTTTCGGCAGTCTTGACTGCA 4982868 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690 |||||||| ||||| | |||||| |||| || |||||||| | ||| | || || || Sbjct 4982869 GTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTC-GCTGGGAGTGAG 4982927 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | ||| |||| || || ||||| ||||| || || | ||| |||||| Sbjct 4982928 ACCACGGAGGTAAGAGTTCTCGACAAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 4982987 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| || | || | | || | || | || |||||||| || || || | || Sbjct 4982988 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 4983047 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| || | || | |||| || |||||||| Sbjct 4983048 CTGACCGACAAGCGCAGTCATTTGAGAAATATT 4983080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471804173343944