Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq334 127 2e-23 seq667 125 9e-23 seq223 96.9 4e-14 >seq334 Length=5800717 Score = 127 bits (140), Expect = 2e-23 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||||||||||||||||||||| || || | || |||||| | || |||||||||| Sbjct 2941192 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTCGGCTGCAAGACCGTCGCCAACATGA 2941251 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| ||||| ||||||||||| || || ||||||| Sbjct 2941252 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACATCA 2941296 >seq667 Length=3682606 Score = 125 bits (138), Expect = 9e-23 Identities = 206/290 (71%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| |||| || ||||||||||| || ||||| Sbjct 2045311 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 2045370 Query 869239 CTTGAGCCAAAAGAT---GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 869295 ||||||||| ||||| |||| || || || ||| ||||| || || || || || Sbjct 2045371 CTTGAGCCAGAAGATAGAGGCGAAGGCACCGC---TGAAGAAGATACCTTCAACAGCAGC 2045427 Query 869296 AAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT-CCTTGTTGATCCACTTCATCG 869354 ||| | | ||| || | |||||||| | ||| || | |||| |||||| || | Sbjct 2045428 GAAGGCAACGAGACGTTGGGCAAAGGAG--GAGTCCTTATCTTG--GATCCATCGGATGG 2045483 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC 869413 ||||||| ||||| || | | | || | || || |||||| ||||||| ||| | Sbjct 2045484 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC 2045543 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| || ||||||| ||||||||||| ||||| || |||||||| Sbjct 2045544 -GCTGGGCGGGCTCCTTGATGTAGGTGTCGATTAGGAGGGAGTAGGTCTC 2045592 Score = 113 bits (124), Expect = 6e-19 Identities = 178/252 (71%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | |||||| |||||| |||||||||||||| | || ||||| Sbjct 2044997 GCCTTCTGGTAGTCGGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 2045056 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||||||| ||| ||| || |||||| Sbjct 2045057 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGA-- 2045114 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || || || || ||||| ||||| |||||||| ||||||| | | ||||||||||| Sbjct 2045115 CAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGA 2045174 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 ||| || || || | ||| | | ||||| | ||| || |||||| || || Sbjct 2045175 GGAGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTGA 2045234 Query 868929 TGATCTGCCTGG 868940 |||| | ||||| Sbjct 2045235 TGATAT-CCTGG 2045245 >seq223 Length=6419709 Score = 96.9 bits (106), Expect = 4e-14 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 1630075 TAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTG 1630134 || || || |||| ||| || || || ||||| || || | ||||| || |||||| Sbjct 1882318 TACCGAGCAGTGTTGTTGAACACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTG 1882377 Query 1630135 GTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCG 1630194 || || || | ||| | ||| | || || | |||| | | || || || || Sbjct 1882378 GTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACATTCAGACCAATACCACCA 1882437 Query 1630195 GCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCG 1630254 ||| ||||||||| | || || ||||| || |||||||| ||||| || ||| Sbjct 1882438 GCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCA 1882497 Query 1630255 GCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGCGTTGAAG 1630314 ||||||| || || | ||||| || || ||| || || | ||||||||||||||| Sbjct 1882498 TCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAG 1882557 Query 1630315 AGCGTGGG 1630322 |||||||| Sbjct 1882558 AGCGTGGG 1882565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107080769945704