Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq667 156 7e-32 seq334 118 2e-20 seq223 95.1 2e-13 >seq667 Length=3682606 Score = 156 bits (172), Expect = 7e-32 Identities = 237/331 (72%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| ||| || ||||||||||| || ||||| Sbjct 2045311 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 2045370 Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||| ||| || || || ||| ||||| || || || || || Sbjct 2045371 CTTGAGCCAGAAGATAGAGGCGAAGGCACCGCT---GAAGAAGATACCTTCAACAGCAGC 2045427 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| | ||||| || | |||||| | | || || | | | | |||||| || || Sbjct 2045428 GAAGGCAACGAGACGTTGGGCAAAGGAGG--AGTCCTTATCT-TGGATCCATCGGATGGC 2045484 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 794575 ||| || ||||| || | | |||| | || || |||||| ||||||| ||| | Sbjct 2045485 CCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTCG 2045544 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || | | || ||||||| |||||||||||| ||||| ||||||||||| ||||| |||| Sbjct 2045545 -CTGGGCGGGCTCCTTGATGTAGGTGTCGATTAGGAGGGAGTAGGTCTCGGAGTGAATGT 2045603 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || |||||||||||| || ||||| Sbjct 2045604 TCTCCATCATGATCTGGAAGCCGTAGAAGCA 2045634 Score = 129 bits (142), Expect = 9e-24 Identities = 186/259 (72%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | |||||| |||||| |||||||||||||| | || Sbjct 2044990 GACACCGGCCTTCTGGTAGTCGGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAG 2045049 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--G 794009 ||||| |||||| | ||| ||||||| | | |||| ||||||| || | Sbjct 2045050 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAG 2045109 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| |||| || || || |||||||| ||||||||||| ||||||| | | |||| Sbjct 2045110 AGCGA--CAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTC 2045167 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| ||| || ||| || | ||| ||| ||||| | ||| || |||||| Sbjct 2045168 ATGCCGAGGAGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCG 2045227 Query 794130 TCGATGATGATCTGCCTGG 794148 || ||||||| | ||||| Sbjct 2045228 TCAGTGATGATAT-CCTGG 2045245 >seq334 Length=5800717 Score = 118 bits (130), Expect = 2e-20 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||| || || || | || ||||||||||| |||||| | | Sbjct 2941192 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTCGGCTGCAAGACCGTCGCCAACATGA 2941251 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| ||||| || |||||||| || || ||||||| Sbjct 2941252 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACATCA 2941296 >seq223 Length=6419709 Score = 95.1 bits (104), Expect = 2e-13 Identities = 171/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 2073548 CATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGT 2073607 |||| || || |||| ||| || || || ||||| || |||| ||||| || |||| Sbjct 1882316 CATACCGAGCAGTGTTGTTGAACACACGAAGCATAGGAACAACACCGTTCGATGTACCGT 1882375 Query 2073608 TGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGC 2073667 |||| || || | ||| | ||| | || || | |||| | | || || || | Sbjct 1882376 TGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACATTCAGACCAATACCAC 1882435 Query 2073668 CGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGATCGAGT 2073727 | ||| ||||||||| | || || | || || || |||||||| ||||| || || Sbjct 1882436 CAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGT 1882495 Query 2073728 CGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCGGCATTGA 2073787 | ||||||| || | || ||||| || || ||| || | | |||||||| |||| Sbjct 1882496 CATCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGA 1882555 Query 2073788 AGAGCGTGGG 2073797 |||||||||| Sbjct 1882556 AGAGCGTGGG 1882565 Score = 86.0 bits (94), Expect = 1e-10 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||| ||||| |||||||||||||| |||||||| ||| |||| || || ||| | | Sbjct 2749215 GTACTTAGTGACAGCCTTGGTACCCTCAGAGACGGCATGCTTGGCAAGCTCACCGGGGAG 2749274 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || | ||||||||||| |||| Sbjct 2749275 GATGAGACGAACAGAAGTCTGGATCTCTCGGG 2749306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916170661312568