Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq223 149 6e-31 seq667 145 7e-30 seq556 118 1e-21 >seq223 Length=6419709 Score = 149 bits (164), Expect = 6e-31 Identities = 628/977 (64%), Gaps = 46/977 (5%) Strand=Plus/Plus Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 |||| ||||| | || ||| | |||| || ||||| ||||| || ||||| || || Sbjct 1881215 TCGACAAGGTCCTTGAGCAGCCAGGGATTGACAACCTGGAACTCACCAGCGAGAACACGG 1881274 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 || | || | ||| || | || || || ||||||||||||||| |||||| | | Sbjct 1881275 CGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 1881334 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 || | || || ||||| || | ||||| ||| || | ||| | | || | | Sbjct 1881335 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACT 1881394 Query 148413 TTGCGCTTCA-GAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 | | || | ||| | ||||||||||||| || || | ||||||||||| || | Sbjct 1881395 TC-CTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTTCCACATATCAAA 1881453 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||| || || || | | |||| |||| | | | | ||| || || | | | Sbjct 1881454 CTGGAGGATACCCTCGGAGGTGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCTTT 1881513 Query 148532 CGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| | ||| | || ||| || | | ||||| ||||| || ||| ||| Sbjct 1881514 GGCCAGCT-GCACGGAGGCAGTGAGAGCAGCATGATAAATGGTCTCAAAGATCTGCTTGT 1881572 Query 148591 TGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 ||||| ||| ||| | ||| | ||||||||||| | || || || | Sbjct 1881573 TGAGCTCACGAGCC---TCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCAG 1881629 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 | |||||||| || || | |||||||| ||||| ||||| | ||| || || Sbjct 1881630 CCAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCT 1881689 Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || || |||||||| ||||||||||||| || ||||| | || |||| | | Sbjct 1881690 GGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGA 1881749 Query 148768 TTCTGCGCAGCAA------TTCA--AAATCGTA-CTTG--TCATC-TAC--GATGCATCG 148813 ||| || ||| || ||||| | | ||||| || |||| | Sbjct 1881750 CCCTGTGCNNNNNNNNNNCTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAGGA 1881809 Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 | | | | |||||| || ||||| || || ||| || ||||| | |||||| | Sbjct 1881810 GGGTAGAGACAGAGAGGCGAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCGAT 1881869 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 || || | ||| || ||| || | ||| || | ||||||||| |||||||||| Sbjct 1881870 AATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCG 1881929 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993 |||||| || |||||||| |||||| | || || || || ||| | || | || Sbjct 1881930 GTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAAT 1881989 Query 148994 GA---ACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT------CCTG 149044 | ||| ||| | ||| || |||| || || | |||||||| ||| Sbjct 1881990 GGCGTACCA---CAGCTTCTGAGC-----CTTGATGGTCTT-GCGACCCTTACCCGCCTT 1882040 Query 149045 CTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGG 149102 |||||| | ||| | |||| || ||| |||| |||||||| ||| |||| || ||| Sbjct 1882041 CTCGTACTTTTCGTACAGAGCC--TCAAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 1882098 Query 149103 CACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGA 149162 |||| || |||||||| || | ||| | |||| | | ||||||||||| || ||| Sbjct 1882099 CACTCGTTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATGAAAAGA 1882158 Query 149163 TCGGGCACCCAGAGCGC 149179 ||||| | ||| || || Sbjct 1882159 TCGGGGATCCAAAGGGC 1882175 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || || ||||| ||||| || |||||||| |||||| Sbjct 4545400 TCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCAGGGGGGATGCCCTCCTTG 4545459 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | || ||| || |||| ||||| | Sbjct 4545460 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 4545519 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 4545520 GTCTTGCCCGTCAGGGTCTTCACGAAA 4545546 >seq667 Length=3682606 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||||| Sbjct 3145110 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTGC 3145168 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||||||||| |||||||| |||||||| |||||| || Sbjct 3145169 CAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 3145228 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 3145229 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 3145288 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 3145289 TCTTGACGAAAATCTGCAT 3145307 >seq556 Length=5145791 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || |||||||| | ||| |||||| ||||||||||| Sbjct 1548860 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 1548919 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | || |||||||| |||||||| || ||||| || ||||| |||| Sbjct 1548920 GCGAAGATCAAGCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTGGACTTG 1548979 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | ||| || |||| ||||| ||| ||||||||||| || Sbjct 1548980 ACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 1549039 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 1549040 TTGACAAAGATCTGCATG 1549057 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| |||| || ||| ||| | || || | |||||| | Sbjct 1548121 GGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCA-TCTTCTAACTGCTTAC 1548179 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || |||||||| || || || || || |||||||| ||||| || Sbjct 1548180 CAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCT 1548239 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| ||| ||| || || | ||||| ||| || || || |||| Sbjct 1548240 TCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCAGTAAGAG 1548299 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 1548300 TCTTCACAAAAATCTGCAT 1548318 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGC 133514 ||| | |||||| || ||||| || ||||| ||| | | || || || || ||||| Sbjct 1548571 ATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCG--TCTTCGAGT 1548628 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || ||||||||||| |||||||| || |||||||| |||| Sbjct 1548629 TGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATC 1548688 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || |||| | ||| || || | ||||| || ||||| Sbjct 1548689 TTCGACTTAACATTGTCGATGGTATCGGATGACTCGACCTCAAGGGTGATTGTCTTGCCA 1548748 Query 133635 GTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 1548749 GTGAGGGTCTTGACGA 1548764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416497554880