Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq667 188 1e-41 seq223 91.5 2e-12 >seq667 Length=3682606 Score = 188 bits (208), Expect = 1e-41 Identities = 359/514 (70%), Gaps = 26/514 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || | Sbjct 2045848 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 2045790 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| ||| ||| | || |||| ||| Sbjct 2045789 TCTCCAAAGATCTCCACG----ACTGGAACAACCGCCTGACTGCTGATGAGCAGTTCTTC 2045734 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||| || ||| ||||| ||| ||||| || || ||||||||| | Sbjct 2045733 GTCTCTCACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGT 2045675 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | |||||||| | || ||||| |||| || ||||| |||||||| Sbjct 2045674 CGAGCGTTTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGAT 2045615 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||| ||||| || |||||||| ||||| |||||||||||| ||||||| Sbjct 2045614 CATGATGGAGAACATTCACTCCGAGACCTACTCCCTCCTAATCGACACCTACATCAAGGA 2045555 Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || | | || | ||| ||||||| |||||| || || | || | | | || | Sbjct 2045554 GCCCGCCCAG-CGAACCTACCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGA 2045496 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAG-GAGGGCCTCGACACTTTGCCGAGCGGC 1456185 |||| |||||||| || |||||| |||| | || ||| | ||||||| | || | Sbjct 2045495 AGGCTGACTGGGCCATCCGATGGATC--CAAGATAAGGACTCCTC-CTTTGCCCAACGTC 2045439 Query 1456186 TCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCC---ATCT 1456241 |||| | ||| || || || || || ||||| ||| || || || |||| |||| Sbjct 2045438 TCGTTGCCTTCGCTGCTGTTGAAGGTATCTTCTTC---AGCGGTGCCTTCGCCTCTATCT 2045382 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | |||||||||||||| || |||||||||||||| Sbjct 2045381 TCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCT 2045348 Score = 93.3 bits (102), Expect = 6e-13 Identities = 175/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || |||||| || ||| | ||||| ||| ||| | || || || Sbjct 2045238 ATCATCACTGACGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCC 2045179 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| ||||||||||| | | |||||| ||||||||||| || ||||| || || | Sbjct 2045178 CTCCTCGGCATGAACTCTGAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCTGATCGTC 2045121 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || ||| || ||||| |||| | | ||||||| ||| | ||| Sbjct 2045120 TCCTTGTCGCTCTTGGCAACG-AGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATG 2045062 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| |||||| |||| || ||| ||| Sbjct 2045061 GAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGCCGACTACCAG 2045002 Query 1456762 AAGGCCGGCGTC 1456773 |||||||| ||| Sbjct 2045001 AAGGCCGGTGTC 2044990 >seq223 Length=6419709 Score = 91.5 bits (100), Expect = 2e-12 Identities = 189/279 (68%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 259895 ATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||| ||||| ||| ||||| || | ||||||||||| || |||||||| || | Sbjct 1882595 ATGTC-CAGCAAGTTCTTCACGCATGCTTCCCCCACGCTCTTCAACGCCGGCACCCCTCA 1882537 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 || || || || ||||| || | || ||||||| || || ||||| ||||| Sbjct 1882536 GCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGATGACAGTATTGAGGGAATCTA 1882477 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 || || |||||| || || | ||||||||| ||| || || || ||| | | Sbjct 1882476 CGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTCTGAATGT 1882417 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||| | || || | ||| | ||| | || || |||||||| || ||||| | Sbjct 1882416 GCACCGTATCCGTGCTACTGGCTCATACATCGCCGGTACCAACGGTACATCGAACGGTGT 1882357 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTA 260172 ||| || |||||||| || || ||| |||| || || || Sbjct 1882356 TGTTCCTATGCTTCGTGTGTTCAACAACACTGCTCGGTA 1882318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177742526291344