Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq223 168 8e-37 seq667 122 1e-22 >seq223 Length=6419709 Score = 168 bits (186), Expect = 8e-37 Identities = 538/823 (65%), Gaps = 27/823 (3%) Strand=Plus/Plus Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | |||||| || || | |||||| || || || || | ||||||||||| Sbjct 1881861 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 1881920 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||||| |||||| |||||||||||||||||| | || | || ||||| ||||| | Sbjct 1881921 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 1881980 Query 111400 TTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCT 111455 | ||||| || | ||| | | || | | || | |||| ||| | || | ||| Sbjct 1881981 CTCAAGAATGGCGTACCACAGCTTCTGAGCCTTG----ATGGTCTTGCGACCCTTACCCG 1882036 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 || |||||||||| ||| || || ||||||||||| || ||||| ||| || | Sbjct 1882037 CCTTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCTCCGTAGCAGTCGGCGAGGCCAG 1882096 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | || || || || | || | ||| | ||| | ||||| ||||||||||||| Sbjct 1882097 GGCACTCGTTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATGAAAA 1882156 Query 111576 GGTCTGGAATCCACAGGG-ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGG 111634 | || || ||||| |||| | | ||| || || | ||| |||| || | ||| ||| Sbjct 1882157 GATCGGGGATCCAAAGGGCAAGGAAA-AGGTCACGGGCACGAACCTCCTCCTTACCGTGG 1882215 Query 111635 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694 || || | |||||||| || | || ||| | |||||| ||||| || |||| || Sbjct 1882216 TTCTTACGGAGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATGGCA 1882275 Query 111695 ATA------GATCCCTT-TCGACGCCCAG--CTTGATTTACATAGCGCGCTGTGGCGTTA 111745 | | | || ||| | | | ||| | |||| || || ||| ||| Sbjct 1882276 AAAGCACCGGGTCGCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTGTTG 1882335 Query 111746 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAG 111803 || || |||||||| |||| || ||| | ||| ||| || || || ||| || ||| Sbjct 1882336 AACACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAG 1882395 Query 111804 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTT 111863 | | || | | | || | | || |||||||| |||||| ||| ||||| Sbjct 1882396 --CCAGTAGCACGGATACGGTGCACATTCAGACCAATACCACCAGCCATCTTGGAGATCA 1882453 Query 111864 GCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAA 111923 ||||| | | ||||| | ||||| || | || ||| ||||| | | | | Sbjct 1882454 TGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACCA 1882513 Query 111924 GGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGT 111983 ||||||| |||| || || || || || || |||||||| || || | || | Sbjct 1882514 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGCAT 1882573 Query 111984 GAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTC 112041 | ||| | | |||| ||||||| | ||||||||||||||| || || || || Sbjct 1882574 GCGTGA--AGAACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATC 1882631 Query 112042 CCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || ||| || | | || ||||||| ||||| ||| ||| Sbjct 1882632 ACCCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGG 1882674 Score = 113 bits (124), Expect = 6e-20 Identities = 506/787 (64%), Gaps = 20/787 (3%) Strand=Plus/Plus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| |||||| Sbjct 1880897 TCAACAGTGAACTGAATAGGGGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 1880956 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || | ||||| || || | |||||| | || |||| |||||| || Sbjct 1880957 TTGAGGCCAAGCTTCCA-GCCCGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 1881015 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 1881016 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCGCCTCGATCAGCAGCC 1881073 Query 110501 ATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCA 110560 || | || ||| | | ||| |||||||| || ||| ||| ||||| ||| Sbjct 1881074 ATCTGAACGACCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGAGCCTTGACATCG 1881133 Query 110561 TCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATA 110620 | ||||| | | || ||||| |||||||| | | | ||| | | ||||||| Sbjct 1881134 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATA 1881193 Query 110621 TCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACA 110680 | | |||||| ||||| || | ||||| |||| || ||||||| Sbjct 1881194 GCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGATTGACAACCTGG 1881253 Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 |||||||| ||||| | | ||||||| || | ||||| || || ||||| || Sbjct 1881254 AACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCG 1881313 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 || || |||| || || | ||| ||| || ||||| || || | | ||||||||| Sbjct 1881314 TTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTA 1881373 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGT--CGTAGTTGAGCT 110855 || | || | ||||| ||||| ||| | ||||||| | || | || Sbjct 1881374 CGGATGCCGTGTGTCTTGA---CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAG-A 1881429 Query 110856 TGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAA 110915 || || || || |||||| |||||||| || | || | ||| | ||| ||||||| | Sbjct 1881430 GGGCTTGACGTT-CCACATATCAAACTGGAGGATACCCTCGGAGGTGGGGGAACCCTTGA 1881488 Query 110916 AGGTTTCATAGGAACCTTGGGCTTCAGCCA-ATTCACAGCTCGCCTCCAGGGATGCGTGA 110974 |||| |||| ||| | ||| |||| | ||| | || || | || ||| Sbjct 1881489 AGGTGGAGTAGGGACCCTCCTCTTTGGCCAGCTGCAC-GGAGGCAGTGAGAGCAGCATGA 1881547 Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG 111034 || ||||| |||||||| | || | ||| || || ||| || || | | | Sbjct 1881548 TAAATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAA-GGGCAT 1881606 Query 111035 CGGCACA-AAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093 ||| | || || |||| || || || |||||||| | |||||| |||| ||| || Sbjct 1881607 ACGCAGAGCAAGGAAAGCATCAGCCAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCG 1881666 Query 111094 CATATTA 111100 ||| ||| Sbjct 1881667 CATGTTA 1881673 >seq667 Length=3682606 Score = 122 bits (134), Expect = 1e-22 Identities = 332/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct 2045006 TAGTCGGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 2045065 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | || || | | | | || |||| |||| Sbjct 2045066 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 2045120 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 ||||||| | || |||||||||||| ||| ||||||||||| |||| |||| Sbjct 2045121 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 2045180 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| || || || || || |||| | | |||||| || || || | | ||| Sbjct 2045181 CACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTGATGATAT 2045240 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | ||||| | | | ||| | | || | || | || ||| || ||||| Sbjct 2045241 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 2045297 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| |||||||| || || || || || || || |||||| ||||| |||| Sbjct 2045298 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCA 2045357 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| | |||| | ||| | ||| |||||||||||| | Sbjct 2045358 TGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCGCTGAAGAAGATACCTT 2045417 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCAT 122841 | ||| || || |||| || |||| ||| |||||| ||| ||| | | | |||| Sbjct 2045418 CAACAGCAGCGAAGGCAACGAGACGTTGGGCAAAGGAG-GAGTCCTTATCTTGGATCCAT 2045476 Query 122842 TTCATTGCCCATTTCGCCTTCTT 122864 || ||||| | |||||||| Sbjct 2045477 CGGATGGCCCAGTCAGCCTTCTT 2045499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026410515200