Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq667 176 6e-39 seq223 165 1e-35 seq112 84.2 3e-11 >seq667 Length=3682606 Score = 176 bits (194), Expect = 6e-39 Identities = 531/811 (65%), Gaps = 13/811 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| ||| ||| | ||| |||||||| Sbjct 2045006 TAGTCGGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 2045065 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || | | | || | |||| |||||||| Sbjct 2045066 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-CCAAGAGCGACAAGGAGACG 2045124 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||||| ||| || |||||||| |||| |||| ||| Sbjct 2045125 ATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACA 2045184 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| ||| ||||||| || || || | ||| | || Sbjct 2045185 GGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTGATGATATCCTG 2045244 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | || | || ||| || |||||| || Sbjct 2045245 GATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 2045301 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || |||||| |||||| |||||||| Sbjct 2045302 AGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 2045361 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | || ||||||||| || || || Sbjct 2045362 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCGCTGAAGAAGATACCTTCAAC 2045421 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 | ||||| |||| |||||| | ||||||||| | ||| | | ||| || Sbjct 2045422 AGCAGCGAAGGCAACGAGACGTTGGGCAAAGGAGGAGTCCTTATCTTGGATCCATCGGAT 2045481 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | ||||| || ||| || || | ||||| || || | ||||| | | Sbjct 2045482 GGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGGT 2045541 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 | | || || |||||||| | || || || || || || ||| || | Sbjct 2045542 TCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATTAGGAGGGAGTAGGTCTCGGAGTGAAT 2045601 Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 2045602 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGC 2045660 Query 130383 CTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 130442 | ||| | || ||||| ||||| ||||| || |||| || || || | Sbjct 2045661 CACTGAAACGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCAA 2045720 Query 130443 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGAT 130499 |||| | | ||| ||| |||| | ||| || | |||||||||| |||| Sbjct 2045721 GGATGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCCAGTCGTGGAGAT 2045780 Query 130500 CCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 | || |||||||| | |||||| |||||||| Sbjct 2045781 CTTTGGAGAGATCAATCTCCTCAGCAGTCCA 2045811 >seq223 Length=6419709 Score = 165 bits (182), Expect = 1e-35 Identities = 1086/1733 (63%), Gaps = 57/1733 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 1880904 TGAACTGAATAGGGGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 1880963 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| | | ||||| || | |||| | || || | |||| Sbjct 1880964 CAAGCTTCCAGCCCGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGT 1881023 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || | Sbjct 1881024 GGATGTTCAGTGACTGGGACTGATCAATGAAGGCGCCTCGATCAGCAGCCATCTGAACGA 1881083 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 | | | || ||||| |||||| | || || ||| | ||| | ||||| | Sbjct 1881084 CCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGAGCCTTGACATCGGCAGGGATGT 1881143 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104 || || || ||||| ||| | | | ||| | | ||||||| | | |||| Sbjct 1881144 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACC 1881203 Query 118105 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCG 118164 | ||||| || | || |||| | || ||||||||| |||||||| | Sbjct 1881204 ACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGATTGACAACCTGGAACTCACCAG 1881263 Query 118165 CGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCA 118224 |||| || | | |||||||||| ||||| ||||| |||||||| ||||| |||| Sbjct 1881264 CGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCA 1881323 Query 118225 AGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT 118284 || |||| || ||| || ||||| || || | ||| || |||||||||| || | Sbjct 1881324 GAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGT 1881383 Query 118285 TTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTG 118342 | | | | | | | || || ||| |||||||| || | | || | | Sbjct 1881384 GTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTT 1881441 Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||||||||||||||||||||| | ||| | || || |||| || || || || Sbjct 1881442 CCACATATCAAACTGGAGGATACCCTCGGAGGTGGGGGAACCCTTGAAGGTGGAGTAGGG 1881501 Query 118403 GCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTC 118459 ||||| | | |||| | ||||| || ||| || || ||||| || || || Sbjct 1881502 ACCCTCCTCTTTGGCCAGCTGCACGGAG---GCAGTGAGAGCAGCATGATAAATGGTCTC 1881558 Query 118460 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AA 118518 ||| || | || | | |||||| || || || | | || || | || Sbjct 1881559 AAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-CAGAGCAA 1881617 Query 118519 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 118578 || |||| || || || || ||||| || ||||| || || || | ||| ||| | Sbjct 1881618 GGAAAGCATCAGCCAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGT 1881677 Query 118579 TCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638 | ||||| || || || || ||| |||||| | | | || || || | | Sbjct 1881678 TGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAA 1881737 Query 118639 CAACCTT--------TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 118690 |||||| |||| ||| | | | || | || || ||| || Sbjct 1881738 CAACCTGACTGACCCTGTGCNNNNNNNNNNCTTCTTGAAGTCGTA---GCAAGCCTCATC 1881794 Query 118691 AT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 | ||| | || || | | || || || || || |||| | ||| || Sbjct 1881795 GTAGTTGATGAAGGAGGGTAGAGACAGAGAGGCGAGGTTGCAGACAGCGACCTCGTCAGG 1881854 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 || |||||| |||||||| ||||| | ||| || || ||||| || | |||||| Sbjct 1881855 GGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTT 1881914 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 ||| || ||| ||| || ||||||||||| |||||| |||| | || ||||| || Sbjct 1881915 TTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGT 1881974 Query 118868 TTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC- 118925 |||| || ||||| || | ||| | | || | ||| | ||| ||| | | Sbjct 1881975 CTGGGCCTCAAGAATGGCGTACCACAGCTTCTG-AGC---CTTGATGGTCTTGCGACCCT 1882030 Query 118926 --CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 118983 ||| | | |||||||||| ||| || || |||||||| || || | || | || Sbjct 1882031 TACCCGCCTTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCTCCGTAGCAGTCGGCGA 1882090 Query 118984 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 119043 | || || || | ||||| | || | ||| | ||| || ||||| ||||||| Sbjct 1882091 GGCCAGGGCACTCGTTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCA 1882150 Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 119103 |||| || || |||||||| || || ||| || || || ||| | || || | | Sbjct 1882151 TGAAAAGATCGGGGATCCAAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTAC 1882210 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || ||| | || | || || | || ||| | |||||| || || ||||| | Sbjct 1882211 CGTGGTTCTTACGGAGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGA 1882270 Query 119164 CCGCGATTG-AC-----CCCTTACGACGACCAGCCTGG------TTTACATACCTCGCAG 119211 || | | || | ||| | | ||| ||||| |||||| |||| Sbjct 1882271 TGGCAAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGNNNNNNNNNNCATACCGAGCAG 1882327 Query 119212 TGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA 119270 || ||| || ||||||||||| |||| | ||| | ||| || || || || ||| Sbjct 1882328 TGTTGTTGAACACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGA 1882387 Query 119271 -ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTT 119329 || ||| | | | || | || | ||| | | || ||||||||| || ||| ||| Sbjct 1882388 TGTATGAGCC--AGTAGCACGGATACGGTGCACATTCAGACCAATACCACCAGCCATCTT 1882445 Query 119330 TGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATT 119389 ||||| || || | ||||| | ||||||| || || || |||| |||| | Sbjct 1882446 GGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCAT 1882505 Query 119390 TGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGG 119449 | | | |||||| |||| ||| ||| || || || ||||||||||| || || Sbjct 1882506 ATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGG 1882565 Query 119450 TGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC 119500 | || || ||| | | |||| ||||||| | ||| ||||||||||| Sbjct 1882566 GGAAGCATGCGTGA--AGAACTTGCTGGACATCAGATTGTATGTCTCCAAGAC 1882616 >seq112 Length=5402168 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938 || |||||||||||| || ||||| |||||||| || |||||| || ||| ||| |||| Sbjct 3286178 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 3286119 Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998 | || || | || || || ||| |||| || ||| | | || | |||||||||||| Sbjct 3286118 GGAACCCGCCAACAGATGTCCGAAGATAAGCTCAGGAATGTAGATCTTCTCCTTTTCGTG 3286059 Query 180999 CATA 181002 ||| Sbjct 3286058 AATA 3286055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429695926720