Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq223 176 5e-39 seq667 138 1e-27 >seq223 Length=6419709 Score = 176 bits (194), Expect = 5e-39 Identities = 532/811 (66%), Gaps = 23/811 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| ||| | | ||||| || || || || || || Sbjct 1882674 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGT 1882615 Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| | ||||||| |||| | | ||| || || | || || ||| Sbjct 1882614 CTTGGAGACATACAATCTGATGTCCAGCAAGTTCT--TCACGCATGCTTCCCCCACGCTC 1882557 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || || || || |||||| |||| ||||||| | | | | ||||| Sbjct 1882556 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAT 1882497 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 1882496 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1882437 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 104516 || |||||||| || | | || | | | || | | ||| || ||| || | Sbjct 1882436 GGTGGTATTGGTCTGAATGTGCACCGTATCCGTGCTACTGG--CTCATACATCGCCGGTA 1882379 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || ||| ||| | ||| || |||| |||||||| || || ||| ||| || || | Sbjct 1882378 CCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTGTTCAACAACACTGCTCGGT 1882319 Query 104577 ATGTAAATCAAG--CTGGGCGTCGA-AAGGGATC------TATCGCAGTCTATCTTGAGC 104627 ||| | ||| | | | ||| || | | | || |||| || |||| Sbjct 1882318 ATGNNNNNNNNNNCCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGC 1882259 Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 | |||||| | ||| || | || |||||||| | ||| ||||| ||| | ||||||| Sbjct 1882258 CTTGGCACTCCGATGTCTTCGAATTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGG 1882199 Query 104688 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 || ||| || || ||| || || ||||| || ||||| ||||||||| | |||| Sbjct 1882198 TTCGTGCCCGTGACCTTTTCCTTGCCCTTTGGATCCCCGATCTTTTCATGAAGCGCGTTG 1882139 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCG 104807 | ||| || | ||| | || | || || || || ||||| ||| |||| | Sbjct 1882138 AAAAGAACGGTGACTGGACACTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTGCT 1882079 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-- 104865 || ||||||||||| || || ||| |||||||||| | | ||| || | | || Sbjct 1882078 ACGGAGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAAGGCGGGTAAGG-GTC-GCAA 1882021 Query 104866 GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 ||| | | || | || | ||||| | || ||||| || | || || ||||| || | Sbjct 1882020 GACCAT-CAAGGCTCAGAAGCTGTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAA 1881962 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 |||| |||||| ||||| || ||||| |||| ||||| || |||||||| | ||| Sbjct 1881961 ACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTA 1881902 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAAT 105015 ||| || ||||| || || || ||||| Sbjct 1881901 CCATCCGAAGCTCCAACCTTTGCACTGAAAT 1881871 >seq667 Length=3682606 Score = 138 bits (152), Expect = 1e-27 Identities = 178/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| | ||||| | || |||| || || | |||||| || || ||||| || Sbjct 2045535 CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGA 2045476 Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| | | | || | | | | ||||||| | || ||| | || || || |||||| Sbjct 2045475 TGGATCCAAGATAAGGACTCCT-CCTTTGCCCAACGTCTCGTTGCCTTCGCTGCTGTTGA 2045417 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 |||||||||||| ||| ||||| | |||| | |||||||||||||| |||||||| Sbjct 2045416 AGGTATCTTCTTCAGCGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 2045357 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952 ||| ||||| ||||||||||||||| ||||||||||||||||| || ||| || || Sbjct 2045356 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTT 2045297 Query 94953 TGC 94955 ||| Sbjct 2045296 TGC 2045294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255608978880