Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq223 224 1e-53 seq112 111 2e-19 seq667 102 9e-17 >seq223 Length=6419709 Score = 224 bits (248), Expect = 1e-53 Identities = 522/781 (67%), Gaps = 28/781 (4%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | |||||| ||||| || | ||| ||| Sbjct 1882673 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 1882614 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||| ||| | | ||| | |||| ||| ||||| || | || || || ||| Sbjct 1882613 TTGGAGACATACAATCTGATGTCCAGCAAGTTCTTCACGCATGCTTCCCCCACGCTCTTC 1882554 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| || || ||| || || |||| |||||| |||| | |||||||||||| Sbjct 1882553 AACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGATGAC 1882494 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || || |||||||| || |||||| |||||| ||||||||| | | ||| Sbjct 1882493 AGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 1882434 Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||| ||| | | ||| | | | ||||||| | ||| || ||| || || | Sbjct 1882433 GGTATTGGTCTGAATGTGCACCGTA--TCCGTGCTACTGGCTCATACATCGCCGGTACCA 1882376 Query 53478 ACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 |||| | ||| | || | || |||||||| || || ||||||||||| || ||||| Sbjct 1882375 ACGGTACATCGA--ACGGTGTTGTTCCTATGCTTCGTGTGTTCAACAACACTGCTCGGTA 1882318 Query 53536 CGTCAA------CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCC 53589 | ||||||||| ||||| || | || ||||||||||||||||| Sbjct 1882317 TGNNNNNNNNNNCCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCC 1882258 Query 53590 GTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT 53649 |||||| |||| | | || || || || || ||| ||| || ||| | || ||| | Sbjct 1882257 TTGGCACTCCGATGTCTTCGAATTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGT 1882198 Query 53650 GCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 || ||||||||| || || || ||||| || || || |||||| | || || Sbjct 1882197 TCGTGCCCGTGACCTTTTCCTTGCCCTTTGGATCCCCGATCTTTTCATGAAGCGCGTTGA 1882138 Query 53710 GAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCT 53768 ||| ||| || ||| ||||||||||| ||||||||||| |||||| | | || || Sbjct 1882137 AAAGAACGGTGACTGGACACTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTG-CT 1882079 Query 53769 ACGGTGAGGAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACA 53822 |||| ||||||||| | | |||| | |||| || | | |||| ||| Sbjct 1882078 ACGGAGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAAGGCGGGTAAGGGTCGC---- 1882023 Query 53823 AGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGG 53882 |||| ||||||| | || | ||| | || || || || |||| ||||| | Sbjct 1882022 --AAGACCATCAAGGCTCAGAAGCTGTGGTACGCCATTCTTGAGGCCCAGACTGAGACCG 1881965 Query 53883 GAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCG 53942 ||| || | |||| |||||||||| | |||| ||||||||||| |||||| ||| Sbjct 1881964 GAAACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCG 1881905 Query 53943 G 53943 | Sbjct 1881904 G 1881904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 55744 GACGGTGTGGGAGATTCCACAGA---AGAGTCTGATTGACATGAGTGCTGATCGTGGTGC 55800 ||| || ||||||||| | ||| || ||| || | ||| ||||||||| || || Sbjct 1881112 GACTGTTTGGGAGATTTCTCAGCGCCAG-GTCG--TTCAGATGGCTGCTGATCGAGGCGC 1881056 Query 55801 GTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTT 55860 | ||| || ||||||||||| ||||||||| |||| || | || | ||| |||| | Sbjct 1881055 CTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGACCCCACGATGGGCAAGAT 1880996 Query 55861 GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 | | ||||||||| || |||||| || |||||||| || |||||||| || || Sbjct 1880995 CACCAGTATGCACTTTGCGGGCTGGAAGCTTGGCCTCAAGACCGGCATGTACTACCTTCG 1880936 Query 55921 GAC 55923 || Sbjct 1880935 TAC 1880933 >seq112 Length=5402168 Score = 111 bits (122), Expect = 2e-19 Identities = 290/436 (67%), Gaps = 11/436 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| ||||| || |||||||||||||||| ||| || | || || ||||| | | Sbjct 3288244 CCTGTACCAATGCCATCGGCACCGTTGACCAGAACCATGGGGAGGATTGGAGCGTATACC 3288185 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG--TCAGCC- 151992 ||||| | || | ||||| || || | | | || | | ||| ||| || Sbjct 3288184 ATTGGCTCGATCTTCTTGCCGTCTTC-ATAATGA--TGCATCAAGT--TTGGCTCATCCA 3288130 Query 151993 --GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGG 152050 || | ||| ||| || | | ||| || ||| |||||| |||| || | |||| Sbjct 3288129 TGGGGTGGAAGATCTTGCGGGCAAATGGAGACAGACGAGTGAAGGTGTAACGAGGACTGG 3288070 Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110 | ||||| ||||| || || || | || || | |||| ||| || || ||||| Sbjct 3288069 CAGCATCAGATCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGTTCCAGACAGTTGA 3288010 Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170 |||||| | || ||||||||||| |||| | || || || ||| | || Sbjct 3288009 TGTTGTTTGAACCGACGAAATTCTGGGCCAGGCCAATGATAGTCTGTTGGAGAGACTGTT 3287950 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 |||||||||| || || |||||||| | || || || ||||| | | |||||| ||| Sbjct 3287949 CACCGTGGTGGTAGGCAGTCTGCTCAGAGACATAACCAGCCAATTCAACGACCTTCTTGT 3287890 Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 | | | ||| |||||| ||||| || || ||||| ||||| || || || | Sbjct 3287889 CTTTGACGATGTTTCTCTTGAAGCAGGCATATATGACCTTACGCTGACCCGGCTTGAAGC 3287830 Query 152291 CGTCCACCACGTGAGG 152306 | |||| |||| |||| Sbjct 3287829 CATCCAGCACG-GAGG 3287815 >seq667 Length=3682606 Score = 102 bits (112), Expect = 9e-17 Identities = 527/819 (64%), Gaps = 44/819 (5%) Strand=Plus/Plus Query 74472 ACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAA 74531 || ||||| || || ||||||||||| || ||| |||||||||||||| ||||||| Sbjct 2045015 ACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATGAAGTCGAAG 2045074 Query 74532 GGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCCATG-AGGCGATCCGCC 74588 ||||| | || ||| | |||||| | || | | || | || ||||| || Sbjct 2045075 GGGTTGGTGGCCTTGTAGAC---CTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCG 2045131 Query 74589 ACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGT 74648 || || | |||||||||| |||| | | | |||||||| ||| || || || Sbjct 2045132 ACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGA 2045191 Query 74649 GCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTG--GACAATCTTGTGAATG 74705 ||||| |||| ||||| ||| | | || || || || | || | || Sbjct 2045192 GCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTGATGATATCCTGGATCATC 2045251 Query 74706 TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATG 74764 | ||| ||||| || | |||||||||| || | || |||||| || || Sbjct 2045252 TGCTTGCT--GGCACGAC-CCTTGAGGTGAGAGTGGAGGAGGCA-GGCAAAGTCAGTGTG 2045307 Query 74765 CGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACG 74824 || || || | || | || || || || | || || ||||| || ||||| Sbjct 2045308 AAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACG 2045367 Query 74825 CTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGC 74884 |||||| | ||| ||||| | ||||| ||| ||||||||||| ||||| ||| || Sbjct 2045368 CTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCGCTGAAGAAGATACCTTCAACAGCAGC 2045427 Query 74885 AAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTGA--GC 74938 ||||| || || ||||| || || | | || | || ||||| || || || Sbjct 2045428 GAAGGCAACGAGACGTTGGGCAAAGGAGGAGTCCTTA-TCTTGGATCCA--TCGGATGGC 2045484 Query 74939 CCATTCAGCTTTTCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGAAGAGGCTTGCCT 74997 ||| ||||| || | || | ||||||| | | || || || | ||||||| | | Sbjct 2045485 CCAGTCAGCCTT-CTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGG--T 2045541 Query 74998 TCTCTT--CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 || || |||| ||||||| | |||| || | || ||||| ||||| || ||||| Sbjct 2045542 TCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATTAGGAGGGAGTAGGTCTCGGAGTGAAT 2045601 Query 75056 CGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC--C 75113 ||| | | |||| | ||||||| | || ||||| | ||||| || || | Sbjct 2045602 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCC 2045661 Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173 ||||| || | ||| ||||| |||| || || || ||||| ||||| ||||| Sbjct 2045662 ACTGAAACGCTC--GACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCA 2045719 Query 75174 AGTACCATTTTGATA----AAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATCCTT 75226 || | | ||| | ||| ||||||| |||| || |||| ||| || | Sbjct 2045720 AGGA----TGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCCAGTCGTG 2045775 Query 75227 CAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 || || | | |||||||||||| | |||||||| Sbjct 2045776 GAGATCTTTGGAGAGATCAATCTCCTCAGCAGTCCAGAA 2045814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211129777600