Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq223 228 9e-55 seq556 185 1e-41 seq667 156 5e-33 >seq223 Length=6419709 Score = 228 bits (252), Expect = 9e-55 Identities = 1137/1781 (64%), Gaps = 83/1781 (5%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| ||||||||||| ||||||||| | |||| Sbjct 1880927 GCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAGCCCGCAAAGTGC 1880986 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 ||| ||| ||| | | ||||||| || |||| ||||||||| ||||| |||||| Sbjct 1880987 ATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGA 1881046 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210 ||||| || || ||||| || ||||| | || | || | | | | ||| ||||| Sbjct 1881047 TCAATGAAGGCGCCTCGATCAGCAGCCATCTGAACGACCTGGCGCT-GAGAAATCTCCCA 1881105 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || ||||| |||| | || | || |||| || | | | | || Sbjct 1881106 AACAGTCTTATACAGAGCCTTGACA---TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 1881162 Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||| | || |||| | || |||| || | ||| | ||| | | | || Sbjct 1881163 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 1881222 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 || || | || | | ||| || | || |||| || ||||| || || | Sbjct 1881223 GTCCTTGAGCAGCCAGGGATTGACAACCTGGA---ACTCACCAGCGAGAACACGGCGTTG 1881279 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | || | ||||| ||||| || ||||||||| || || ||||| | || || Sbjct 1881280 GTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACT 1881339 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || | | | ||| || || | |||||| |||||| ||||| Sbjct 1881340 GGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 1881399 Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553 || | | || | ||| | ||| | ||| |||| |||||| || | Sbjct 1881400 TCGAAGAGTCTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACGTTCCACATATCAAAC 1881454 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||| ||||| || | || || ||| ||| || ||| || |||||| ||| Sbjct 1881455 TGGAGGATACCCTCGGAGGTGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCTTTG 1881514 Query 80614 GCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 ||||||| |||| || | || || || ||||||||| |||||||| |||||| Sbjct 1881515 GCCAGCTG-CACGGAGGCAGTGAGAGCAGCATGATAAATGGTCTCAAAGATCTGCTTGTT 1881573 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 | | || |||| || ||||| | || | || | ||| | |||||||| Sbjct 1881574 GAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCAGCCAG 1881633 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAA 80791 ||||||||| || | | || || ||||||||| |||| | | || | ||||| | | Sbjct 1881634 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGA 1881692 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| ||| |||||||| |||||||||||| |||||||| | | || Sbjct 1881693 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCC 1881752 Query 80852 CATGAAGT--------TTCTGAAAGTCGAATT--GGTTCCCC----TTCACAAATGCCGG 80897 || |||| |||||| | | || | || | || | || Sbjct 1881753 TGTGCNNNNNNNNNNCTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAGGAGGG 1881812 Query 80898 AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGAC 80954 || ||| || || || ||||| || || ||||| |||| || | ||| ||||| Sbjct 1881813 TAGAGACAGAGAGGCGAGGTTGCAGACAGCGACCTCGTCAGGGGCA-CAGTA--CTCGAT 1881869 Query 80955 GATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012 ||||| ||||| | || || ||| || ||||| ||||| || ||||| |||| Sbjct 1881870 AATTTCAGTGCAAAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1881927 Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072 |||||| || ||||||||| |||| | ||| | |||||||| ||| | || || Sbjct 1881928 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1881987 Query 81073 ATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATAC 81132 ||||||| ||| | || | ||||||| |||||| || || | | | ||| Sbjct 1881988 ATGGCGTACCACAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTACCCGCCTTCTCGTAC 1882047 Query 81133 TTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTT 81191 || |||| | || |||| | |||| | ||| | | |||| | ||||||||||| Sbjct 1882048 TTTTCGTACAGAGCCTCAAACTCCTCTCCGTAGCAGT-CGGCGAGGCCAGGGCACTCGTT 1882106 Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGAT 81251 |||||||||||| |||||| || || || || |||||||||| || ||||| Sbjct 1882107 AGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATGAAAAGATCGGGGAT 1882166 Query 81252 CCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAA 81311 ||| ||||| ||| ||||| ||| || ||||||| | ||| ||||| || | Sbjct 1882167 CCAAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACCGTGGTTCTTACGGAG 1882226 Query 81312 CTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC---- 81366 || || || || | || || | ||||| ||||| || || | ||| | | || Sbjct 1882227 ATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 1882286 Query 81367 -CCCTTGCGACGGCCACCCTGG------TTGACGTAACGGGCAGTCGCGTTAAATACACG 81419 | |||| |||||||||| | || || ||||| ||| || ||||| Sbjct 1882287 TCGCTTG---TTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTGTTGAACACACG 1882343 Query 81420 CAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGC 81479 | |||||| | | ||| | || |||||| ||||| |||| || || | || Sbjct 1882344 AAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGC 1882403 Query 81480 GCG--CACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACAC 81537 || || ||| ||| ||||| || ||||| | | ||| || ||| ||||| Sbjct 1882404 ACGGATACGGTGCACATT--CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAG 1882461 Query 81538 CGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAG 81597 || | || || || |||||||| || || || | ||||| |||| |||||| || Sbjct 1882462 GTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACCAAGAAGCAA 1882521 Query 81598 CTTGACATCTGAGGGCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656 ||||| || ||||| | |||||| ||||| || || |||| || || |||| Sbjct 1882522 GATGACAATTG-GGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGCATGCGTGAA 1882580 Query 81657 ATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAAT 81716 | | | |||||||| | || || ||| ||| || ||||| ||||| || Sbjct 1882581 GAACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGAT 1882640 Query 81717 ACCGATAGCTACACGCATAAACATGTACTG-GGGCGTCTCG 81756 ||| | || |||||||| | ||||| ||| ||||| |||| Sbjct 1882641 ACCAACAGACACACGCATGATCATGTGCTGAGGGCG-CTCG 1882680 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 4545545 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 4545486 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||| ||||| || Sbjct 4545485 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGACTG 4545426 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| |||||||||| || || || | ||||| || |||| ||| Sbjct 4545425 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 4545366 Query 27595 G 27595 | Sbjct 4545365 G 4545365 >seq556 Length=5145791 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| ||||| || |||||||| ||| | || || |||||| Sbjct 1548546 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACTATCACTTTGGAAGTCGAGTCATCC 1548487 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||| || || || ||||||||||| |||||||| || || Sbjct 1548486 GATACCATTGATAATGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATCAA 1548427 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| |||||||| ||||||| ||| || || ||||||| || Sbjct 1548426 CAGCGACTCATCTTCGCTGGCAAGCAACTAGAGGATGGTCGAACTCTTTCAGACTACAAC 1548367 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| || | || | |||||||| ||||| Sbjct 1548366 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 1548320 Score = 181 bits (200), Expect = 1e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || || |||||||| |||||| |||| ||| | Sbjct 1548762 GTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTCGAGTCATCCGATACCATCGAC 1548703 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| || ||||| ||||||||||| || || Sbjct 1548702 AATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCCTGATC 1548643 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||||||||| || | || ||||| || ||||| || | || |||||| Sbjct 1548642 TTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAA 1548583 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| |||||||| ||| | || || || ||||| Sbjct 1548582 TCCACCCTTCATCTCGTCCTCCGCCTCCGTGGTGG 1548548 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| ||||| || ||||| || || |||||||| ||||| || Sbjct 1548318 ATGCAGATTTTTGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 1548259 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || ||||||||||||||||| ||||| || || ||| Sbjct 1548258 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 1548199 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| || Sbjct 1548198 CAGCGTCTTATCTTCGCTGGTAAGCAGTTAGAAGATGGTCGCACCTTGAGC-GACTACAA 1548140 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || || || | || ||||||||||| || Sbjct 1548139 CATCCAGAAGGAGTCAACCCTCCACCTCGTTCTCCGACTTCGCGGTGGCCA 1548089 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||||||||| || ||||||||||| || || || ||||||||||| Sbjct 1549059 ATCATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 1549000 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | || | ||| | || |||||||| |||||||| || ||||| ||| Sbjct 1548999 TCCGACACTATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGAC 1548940 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || | || || || || ||||| || ||||| | || || || | || || Sbjct 1548939 CAGCAACGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 1548880 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| |||||||| ||||| || | || ||||| ||||| Sbjct 1548879 AACATTCAGAAGGAGTCCACTCTGCATCTCGTTCTCCGCCTTCGTGGTGG 1548830 >seq667 Length=3682606 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 3145307 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 3145248 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 3145247 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 3145188 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| || Sbjct 3145187 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 3145129 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 3145128 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 3145081 Score = 113 bits (124), Expect = 5e-20 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || |||||||| ||||||||||| ||||| || | || || |||| || ||| Sbjct 2045499 AAGAAGGCTGACTGGGCCATCCGATGGATCCAAGATAAGGACTCCTCCTTTGCCCAACGT 2045440 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || || || ||| ||||| || ||||| || | ||| ||||| ||| Sbjct 2045439 CTCGTTGCCTTCGCTGCTGTTGAAGGTATCTTCTTCAGCGGTGCCTTCGCCTCTATCTTC 2045380 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| |||||| | || || |||||||| |||||||| Sbjct 2045379 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 2045320 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 |||||||| || ||| || ||||| Sbjct 2045319 GACGAGGGTCTTCACACTGACTTTGC 2045294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305324237440