Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq223 147 3e-30 >seq223 Length=6419709 Score = 147 bits (162), Expect = 3e-30 Identities = 448/687 (65%), Gaps = 14/687 (2%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 |||||||| || || |||||||||| || ||||||||| | | | ||| || ||||| Sbjct 1882093 CCAGGGCACTCGTTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATG 1882152 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || ||||| || ||||| || |||| || || || |||| | | || || || || Sbjct 1882153 AAAAGATCGGGGATCCAAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACCG 1882212 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 ||||| ||||| || || || | | ||| || ||||| || || || || || Sbjct 1882213 TGGTTCTTACGGAGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATG 1882272 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTAT------ATATCTGGCGGTGTTA 78188 || | | | || ||||| || || || ||||| ||| | || ||||| Sbjct 1882273 GCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTG 1882332 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || | || | | ||| |||| || |||||| ||||| || || || || | || || Sbjct 1882333 TTGAACACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAT 1882392 Query 78249 CTTCCACTTGCGCGAATAT--TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATA 78306 ||| | || || ||| | | || | | || || || || |||||||| || | Sbjct 1882393 GAGCCAGTAGCACGGATACGGTGCACATTCAGA--CCAATACCACCAGCCATCTTGGAGA 1882450 Query 78307 TTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAA 78366 | | || || || | ||||||||||| ||||| |||||||||||| |||| | || Sbjct 1882451 TCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAA 1882510 Query 78367 -GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGAT 78425 ||||| || | |||| ||| | ||| || || || || || | || || || Sbjct 1882511 CCAAGAAGCAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAA 1882569 Query 78426 GCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC- 78484 |||||||| || | || || | ||||||||||| || | || || || || Sbjct 1882570 GCATGCGTGAAGAACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCA 1882629 Query 78485 CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTT 78544 || | || || || | |||||||| | ||| |||||||| | || || |||| Sbjct 1882630 TCACCCCAG-ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTT 1882688 Query 78545 ATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 78604 | | || || | | ||||||| |||||||| || || ||||| || | |||| Sbjct 1882689 ACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTG 1882748 Query 78605 AAAGTCTCTCTCGTAAATAATAACAGA 78631 || || | || |||| ||| |||| Sbjct 1882749 GAAATCGCGGTCATAAACAATGGCAGA 1882775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662617447680