Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq223 165 1e-35 >seq223 Length=6419709 Score = 165 bits (182), Expect = 1e-35 Identities = 446/679 (66%), Gaps = 10/679 (1%) Strand=Plus/Plus Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 ||||| || || || || ||||||| || ||| ||||| | | | ||| || ||||| Sbjct 1882093 CCAGGGCACTCGTTAGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACGCGCTTCATG 1882152 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || ||||| || ||||| || |||| || || || |||| | | || || || || Sbjct 1882153 AAAAGATCGGGGATCCAAAGGGCAAGGAAAAGGTCACGGGCACGAACCTCCTCCTTACCG 1882212 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 ||||| ||||| ||||| || | | ||| || ||||| || || || || || Sbjct 1882213 TGGTTCTTACGGAGATCAAGGAATTCGAAGACATCGGAGTGCCAAGGCTCGAGGTAGATG 1882272 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTAT------ATATCTGGCAGTGTTA 76783 || | | |||| ||||| || || || ||||| ||| | |||||||| Sbjct 1882273 GCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGNNNNNNNNNNCATACCGAGCAGTGTTG 1882332 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 || | || | | ||| |||| || ||||| |||||||| || || || | || || Sbjct 1882333 TTGAACACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAT 1882392 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 ||| ||||| ||| | | || || || || || ||||| || ||||| Sbjct 1882393 GAGCCAGTAGCACGGATACGGTGCACATTCAGACCAATACCACCAGCCATCTTGGAGATC 1882452 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG- 76962 | |||||| || | || || ||||| ||||| ||||| |||||| |||| | || Sbjct 1882453 ATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACC 1882512 Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 ||||| || | |||| ||| | ||| || || || || || | || || || || Sbjct 1882513 AAGAAGCAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGGGAAGC 1882571 Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CC 77081 ||| ||||| | || || | ||||||||||| || | ||| || ||||| | Sbjct 1882572 ATGCGTGAAGAACTTGCTGGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATC 1882631 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTAT 77141 | | || || |||| |||||||| | ||| |||||||| || || ||| ||||| Sbjct 1882632 ACCCCAG-ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTAC 1882690 Query 77142 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 77201 | || || | | ||||||| |||||||| || || ||||| || | |||| | Sbjct 1882691 CGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGA 1882750 Query 77202 AGTCTCTTTCGTAAATAAT 77220 | || | || |||| ||| Sbjct 1882751 AATCGCGGTCATAAACAAT 1882769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928054883840