Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20udum_20[genbank_20GCA_5F002194535.1_202017-06-15] 712 sequences; 56,380,608 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq556 178 3e-39 seq667 168 1e-36 seq223 147 5e-30 seq691 87.8 4e-12 >seq556 Length=5145791 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | ||| || || || |||||||| |||| Sbjct 1548829 ACCACCACGAAGGCGGAGAACGAGATGCAGAGTGGACTCCTTCTGAATGTTGTAATCAGA 1548888 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| |||||||| ||||| |||||| || Sbjct 1548889 GAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGG 1548948 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || ||||| | || ||| | ||||||||||| |||| || || Sbjct 1548949 GATACCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAAC 1549008 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| ||||| || || |||||||| Sbjct 1549009 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACAAAGATCTGCAT 1549056 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || ||| || |||||||||||||| | Sbjct 1548319 ACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGA 1548378 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||||||||| || || || ||||| | || ||||| || || Sbjct 1548379 AAGAGTTCGACCATCCTCTAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGG 1548438 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||||||||||| ||||| || || |||| || || || || | |||| Sbjct 1548439 AATACCCTCCTTGTCTTGGATC-TTGCTCTTCACATTATCAATGGTATCGGATGACTCGA 1548497 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | |||||| ||||| || || | ||||| ||||| || ||||| Sbjct 1548498 CTTCCAAAGTGATAGTCTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 1548546 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | ||| ||| || || ||||||||||| || Sbjct 1548547 ACCACCACGGAGGCGGAGGACGAGATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGC 1548606 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| || || ||||| || || |||||||||| || || |||||| || Sbjct 1548607 AAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGG 1548666 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| || || || | ||||| Sbjct 1548667 GATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATGGTATCGGATGACTCGAC 1548726 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 || || ||||| ||||| || || | ||||| |||| ||| | |||| Sbjct 1548727 CTCAAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGACTATAAGGATTT 1548776 Score = 129 bits (142), Expect = 1e-24 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC-AGC 282931 ||||| || || || || || || || | || || || |||||||||||||| | Sbjct 1548092 CCACCGCGAAGTCGGAGAACGAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTC 1548151 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||| |||| || || || || ||||| | ||| || || ||| || Sbjct 1548152 AAG-GTGCGACCATCTTCTAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGG 1548210 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| || ||| ||||| || ||| | ||||||||||| | |||| Sbjct 1548211 AATACCCTCCTTGTCCTGAATC-TTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGA 1548269 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || || | |||||| || || |||||||| Sbjct 1548270 CCTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTTCACAAAAATCTGCAT 1548318 >seq667 Length=3682606 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||| || || |||||||||||||| Sbjct 3145080 ACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 3145139 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || ||||| || Sbjct 3145140 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGG 3145199 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 3145200 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 3145259 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 3145260 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 3145310 Score = 109 bits (120), Expect = 1e-18 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | || | | ||| |||||||| | || ||| |||| || Sbjct 2045238 ATCATCACTGACGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCC 2045179 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || |||||||||| |||| |||||| ||| || || || ||||| ||||||||| | Sbjct 2045178 CTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTC 2045119 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || || || || ||||||| || || || ||| |||||||||| || |||||| Sbjct 2045118 CTTGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAG 2045059 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || || || ||||||||||| ||||| || ||| || || | | Sbjct 2045058 AACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGCCGACTACCAGAAG 2044999 Query 230403 CCCGGTGT 230410 ||||||| Sbjct 2044998 GCCGGTGT 2044991 >seq223 Length=6419709 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || || || |||||| Sbjct 4545367 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 4545426 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || ||||||||| || || ||||||||||| |||||||| | || || | ||| Sbjct 4545427 AGTCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4545486 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 4545487 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4545545 >seq691 Length=3034478 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 315640 AATTCGCCACTGTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCC 315699 || ||| || |||| |||| | | || ||||| |||| ||||| || |||| | | Sbjct 1624080 AACTCGGCAGAGTGAGTAATGATGATGACACCACCCTCGAACTTCTTCAGGGCCTTGGAC 1624139 Query 315700 ATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGG 315759 | |||||||||| || || || | | ||||||| ||||| ||||| ||||| | || Sbjct 1624140 AGGGCACCGAGAGAGTCACGATCGAGATAGTTGGTAGGCTCGTCAAGGACGATAAGATGA 1624199 Query 315760 GGTTGTTGCCATAGAGCG-GCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCC 315818 ||| | ||||| ||||| || | | || ||| | || ||||||||||| || Sbjct 1624200 GGTCGCTGCCA-AGAGCAAGCAGCAAGGACAGTCTTGACACGCTGACCACCAGACAGACC 1624258 Query 315819 ACGGATGCGAGAATGAG 315835 ||| |||||||| |||| Sbjct 1624259 ACGCATGCGAGAGTGAG 1624275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046729651121648