Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq3424 140 7e-28
seq592 87.8 4e-12
>seq3424
Length=5400
Score = 140 bits (154), Expect = 7e-28
Identities = 140/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511
||||||||||| || || ||| ||||||||||| ||||| ||||||||| | | ||
Sbjct 4040 GGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTC 4099
Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571
|| || || ||||||| || ||||| | | |||||||| | || |||||| |||
Sbjct 4100 GCCCTCGGCAACGAGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATC 4159
Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631
|| || || ||||||||||||||||| ||||||||| ||||||| |||| | |||||
Sbjct 4160 TCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCTGGT 4219
Query 230632 GT 230633
||
Sbjct 4220 GT 4221
>seq592
Length=7392
Score = 87.8 bits (96), Expect = 4e-12
Identities = 199/289 (69%), Gaps = 8/289 (3%)
Strand=Plus/Plus
Query 282393 ACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAAT-TTCTAG-GAGACTGGGAAAAC 282450
||||| || |||||||||| | |||||| | |||| ||| || ||||| |||||
Sbjct 5389 ACGATGGGAGTGATGAACTCTTGCAAGAAGTCCGGAACCTTCAAGAGAGAC-GGGAACTG 5447
Query 282451 AGCTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 282510
|| || | ||||| || | ||||| || ||| |||| || |||| || |
Sbjct 5448 GACT-TGAAGGAAGTTGATCAGGAGACCCTTGATATGACTTCCATCGTGATCCTGATCAG 5506
Query 282511 TCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCGGTTT 282570
|||||||||||| ||| ||||||| ||| |||||| ||||||| | | |
Sbjct 5507 TCATGATCATCAGATGGCCGTATCGAAGACTCTTGGTGTCTGTGTACACCTGCTTGTGCT 5566
Query 282571 GAAGGCCCAAAATTTGTTTGA-GCGCGGTGATTTCTTCGTTCTTTGTGATACTTG-CCAC 282628
|| |||| | || |||| | | | |||||| | |||||| ||||| || | | ||
Sbjct 5567 TCAGACCCAGGAACTGCTTGATGTTCTG-GATTTCCTGGTTCTTGGTGAT-CTGGTCGAC 5624
Query 282629 AGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCA 282677
|||||||| ||||| |||| |||||| ||||| || || ||||||
Sbjct 5625 GCTGGCATCGCGGACGTTGAGCATCTTACCACGGAGTGGGAAGACACCA 5673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057539623190660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |