Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3424 324 1e-83
seq20342 149 6e-31
seq1107 149 6e-31
seq7999 141 1e-28
seq2352 138 1e-27
>seq3424
Length=5400
Score = 324 bits (358), Expect = 1e-83
Identities = 563/809 (70%), Gaps = 25/809 (3%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | ||||||| | || ||
Sbjct 3365 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTA 3424
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | ||| ||| | | |||||| ||| ||
Sbjct 3425 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACTGCCGACGAGCAGTTCTTCGTCTC 3483
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || ||||| ||||| ||| |||||||||||||||||||| || ||||||||
Sbjct 3484 CCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGTCGAGCG 3543
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| ||||| ||| | ||||||| || |||||||||||||| |||||| ||
Sbjct 3544 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGAT 3603
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC------GTGC--GC 116923
||||||| | ||||| || | || ||| |||||| ||||| ||| | || ||
Sbjct 3604 GGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGAGCCAGC 3663
Query 116924 TCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG 116983
|| | ||| || | | || |||||||| ||||| || || || || ||
Sbjct 3664 TCAAC------GAACCTAC--CTCTTCAACGCCATTGAGACCATCCCCTGTATCCGCAAG 3715
Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCT 117042
|||||||| ||||| | || |||||| | || ||| || |||| | |||| ||
Sbjct 3716 AAGGCCGACTGGGCCATCCGATGGATC-CAGGACAAGAACTCGTCCTTTGCTCAGCGTCT 3774
Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102
|| ||||| || ||||||||||| ||||||| || || ||| |||| || ||
Sbjct 3775 CGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTG 3834
Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162
||||||||| || ||||||||||| |||||||| || ||||||||||||||| | ||
Sbjct 3835 GCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGA 3894
Query 117163 CGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG 117222
||||||||| || ||||||||| || | || | || | | || | ||
Sbjct 3895 CGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCACCTCAAGGGCCGTGCCAG 3954
Query 117223 CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282
| | | | || ||| ||| ||||||| || ||| |||| |||||| ||||| ||
Sbjct 3955 CAAGCAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGAC 4014
Query 117283 CGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341
||| || || || |||| ||||| || | || ||| ||| ||| |||||||
Sbjct 4015 CGAGGCCCT-CCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCG 4073
Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCA 117401
|||||||||||||| | || || ||| || | | || ||| |||||| | |||
Sbjct 4074 AGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTCTACAAGGCCACCA 4133
Query 117402 ACCCGCTGGACTTTATGAACCTCATCTCC 117430
|||| | ||||| ||| | |||||||
Sbjct 4134 ACCCCTTCGACTTCATGGAGAACATCTCC 4162
>seq20342
Length=208
Score = 149 bits (164), Expect = 6e-31
Identities = 148/192 (77%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || |||||||| || ||||||||| |||| || || | |
Sbjct 193 ATGCAAATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCG 134
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || |||| ||||| ||||||||||| ||||||||
Sbjct 133 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 74
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| ||||| |||||||| |||| |||||||| |||||||||
Sbjct 73 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCGGACTACAAC 14
Query 40870 ATCCAGAAGGAG 40881
||||||||||||
Sbjct 13 ATCCAGAAGGAG 2
>seq1107
Length=10776
Score = 149 bits (164), Expect = 6e-31
Identities = 173/231 (75%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || || || |||||||| || || |||||| |||| || || |
Sbjct 5348 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 5407
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | |||| ||||| || || | ||||| |||||||||||| | ||
Sbjct 5408 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 5466
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| |||||||||| || ||||| ||||| || || | |||||||| | ||||||
Sbjct 5467 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 5526
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||| ||| || || || || | ||| || | || ||
Sbjct 5527 CAACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTCCGCCTGCGTGGTGG 5577
>seq7999
Length=1671
Score = 141 bits (156), Expect = 1e-28
Identities = 140/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | |
Sbjct 169 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 228
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| |||||||||| |||||
Sbjct 229 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACTG 288
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| |||||||| || | || ||||| |||||||||||||||||||
Sbjct 289 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAAG 348
Query 40879 G 40879
|
Sbjct 349 G 349
>seq2352
Length=6378
Score = 138 bits (152), Expect = 1e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || ||||| || || |||||||| | || ||||| | | |
Sbjct 1364 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGAGC 1305
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| || |||| ||||| |||||||||||| | |||||
Sbjct 1304 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 1246
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||| |||| || || || |||||||| |||| |||||||| |||||||||
Sbjct 1245 GCAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAA 1186
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || ||||| ||
Sbjct 1185 CATCCAGAAGGAGTCGACCCTTCATCTTGT 1156
Score = 118 bits (130), Expect = 1e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|||||||| ||||| ||| |||| ||||| || | || | | | | | |||||
Sbjct 2071 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 2012
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| |||| ||||| |||||||||||| | |||||||| || || || | ||| |||||
Sbjct 2011 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATTTTCGCCGGCAAG 1952
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || || | ||||| ||| ||| |||||||||||||||||| | || || ||
Sbjct 1951 CAGCTTGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTCGACCCTCCAC 1892
Query 40894 CTAGT 40898
|| ||
Sbjct 1891 CTCGT 1887
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || || |||||| | || || ||| | ||
Sbjct 1592 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACCCTTGAGGTGGAATCGTCC 1533
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | || || || | ||||| || ||||| || | || ||
Sbjct 1532 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1473
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| |||||||||| || ||||| ||||| || |||| || || |||| ||||||||||
Sbjct 1472 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 1413
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | || ||||| || ||
Sbjct 1412 ATCCAGAAGGAGTCGACTCTGCACCTGGT 1384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515084070884320
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