Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1107 131 2e-25
seq2352 120 3e-22
seq20342 116 4e-21
seq7999 93.3 5e-14
>seq1107
Length=10776
Score = 131 bits (144), Expect = 2e-25
Identities = 151/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
||||||||||| || || ||||| || ||| || || | || || |||||||| |||
Sbjct 5547 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 5488
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106
|| || ||||||||||||||||||| || | || |||||||||| ||| || |||
Sbjct 5487 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 5428
Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165
| ||| | | | |||||| || ||||| |||| ||||| || || ||||| || ||
Sbjct 5427 A-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTGAGGGT 5369
Query 43166 CTTTACAAAGATTTGCAtttt 43186
||| |||||||| ||||| ||
Sbjct 5368 CTTGACAAAGATCTGCATCTT 5348
>seq2352
Length=6378
Score = 120 bits (132), Expect = 3e-22
Identities = 144/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | ||| || || |||| || |||||||||||||| ||
Sbjct 1173 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 1232
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| |||||||||||||| | || | || |||||||||| ||| | || | | |||
Sbjct 1233 GATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTCACGT 1291
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || |||||||| || || || | |||||||| || || || || ||||| |
Sbjct 1292 TGTCAATGGTATCGCTCGACTCGACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGA 1351
Query 43171 CAAAGATTTGCAt 43183
||||||| |||||
Sbjct 1352 CAAAGATCTGCAT 1364
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || ||||| || |||| || |||||||| || || ||
Sbjct 1401 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 1460
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||||||||| || || | || | || ||||||||| ||| || ||| | |
Sbjct 1461 GATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATT 1520
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| ||||||||| || | ||||| || || || || || ||||| ||
Sbjct 1521 GTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTGAC 1580
Query 43172 AAAGATTTGCAt 43183
||||| |||||
Sbjct 1581 GAAGATCTGCAT 1592
Score = 89.7 bits (98), Expect = 6e-13
Identities = 130/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||||||||| || || || || || | || || |||||||| || |||||
Sbjct 1629 CTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAA 1688
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | | |||||| || ||| || |||| |||
Sbjct 1689 AATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA-CGT 1747
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||||| || ||||| |||| ||||| || || || || || ||||| |
Sbjct 1748 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGA 1807
Query 43171 C 43171
|
Sbjct 1808 C 1808
Score = 82.4 bits (90), Expect = 9e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||| | ||||| || | || || |||||||| || |||||
Sbjct 1904 CTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 1963
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091
|| || ||||||||||||| || | || ||||||||||
Sbjct 1964 AATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 2003
>seq20342
Length=208
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || ||||| || || |||| || |||||||| || |||||
Sbjct 2 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 61
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| || ||||||||||| | || | || |||||||||| ||| | || | || |
Sbjct 62 GATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACAT 120
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
|| | | ||||| || ||||| |||| |||||||| || ||||| || ||||| |
Sbjct 121 TCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCA 180
Query 43171 CAAAGATTTGCAt 43183
| |||||||||||
Sbjct 181 CGAAGATTTGCAT 193
>seq7999
Length=1671
Score = 93.3 bits (102), Expect = 5e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | || || || | || || |||||||| |||||||| |
Sbjct 349 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 290
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| |||||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 289 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 230
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||| || || || |||| |||||||| |||||||| || ||||| || |
Sbjct 229 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 170
Query 43174 A 43174
|
Sbjct 169 A 169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571667626538960
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