Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq2352 132 3e-26
seq1107 123 2e-23
seq20342 104 2e-17
seq7999 102 5e-17
>seq2352
Length=6378
Score = 132 bits (146), Expect = 3e-26
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||||||||| || |||| |||| |||||| || || ||
Sbjct 1174 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAG 1233
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| || ||||||||||| ||| | || ||||||||| ||||| ||| | | |
Sbjct 1234 ATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTG 1293
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | |||| |||| ||||| |||| |||||||| || || |||||||| || |||
Sbjct 1294 TCAATGGTATCGCTCGACTCGACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACA 1353
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 1354 AAGATCTGCAT 1364
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG--G 34220
|| |||||||| | || |||||||| | ||| || ||||| |||||||||||| |
Sbjct 1366 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 1425
Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
| || | ||| |||| || | ||||||||| || || ||||| ||||| || || |
Sbjct 1426 AGAGTT--CGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAG 1483
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | || |||||||| ||||| || | || | | || | |||| |||||| |
Sbjct 1484 GAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCA 1543
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || | ||||| || || |||||||| || || || |||||||||||
Sbjct 1544 CCTCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1592
Score = 95.1 bits (104), Expect = 8e-15
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| |||||||| ||||| || ||| | || || | ||||||||| ||||||
Sbjct 1905 TCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAA 1964
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| || |||||||||||| ||| | || ||||||||| ||||| ||| | || |
Sbjct 1965 ATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTG 2024
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365
| || | ||| | || ||||| || | || ||||| ||||| ||
Sbjct 2025 TCGATGGTATCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGT 2071
>seq1107
Length=10776
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || |||||||| | || || || ||||| |||||||||||| |
Sbjct 5577 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 5518
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | ||||||||| || || ||||| |||||||||||| |||
Sbjct 5517 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 5458
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | | || | |||| || || ||
Sbjct 5457 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 5398
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || || ||||| || || |||||||||||||||
Sbjct 5397 TCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCATC 5350
>seq20342
Length=208
Score = 104 bits (114), Expect = 2e-17
Identities = 140/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||| | ||| ||| |||| |||| ||||||||| |||||
Sbjct 3 TCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 62
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| || ||||||||||| || | || ||||||||| ||||| ||| | ||
Sbjct 63 ATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 122
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | || | || || || || | |||||||| || || ||||| || |||||
Sbjct 123 TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACG 182
Query 34379 AAGATCTGCATCGCT 34393
||||| ||||| |||
Sbjct 183 AAGATTTGCATGGCT 197
>seq7999
Length=1671
Score = 102 bits (112), Expect = 5e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||||| || ||| | || |||| ||||||||| ||||| ||
Sbjct 347 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 288
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| ||||||||||| ||| | || ||||||||| ||||| ||| | || | |
Sbjct 287 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 228
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|| | || | || ||||| || | |||||||| ||||| || || || ||||| ||
Sbjct 227 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322989384633920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |