Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq6553 140 7e-28
seq19606 96.9 7e-15
seq1991 95.1 3e-14
>seq6553
Length=2786
Score = 140 bits (154), Expect = 7e-28
Identities = 415/632 (66%), Gaps = 21/632 (3%)
Strand=Plus/Plus
Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877
||| | | ||||| ||||| || || ||| ||| || |||||||| ||||||||||||
Sbjct 975 TACCAGTACTTTGGCTTCAAGACTCTTGAGCGATCCTACCTCCTCAAGATTGATGGCAAG 1034
Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937
|| || || || ||||||||| | ||||| ||| ||||||| || | || ||||
Sbjct 1035 ATTGTTGAGCGTCCCCAGCACATGATCATGCGTGTGTCTGTCGGCAT---CTGGGGTGAC 1091
Query 248938 -ATAGAGAGCGTG--CTCGAGACGTAC-ACCGGA--ATGAGTGAACGCTGGATGACACAT 248991
||| ||||||| || ||||| ||| ||| || ||| || || | || |||
Sbjct 1092 GATATTGAGCGTGTCCTGGAGACCTACAACCTGATGTCGAGCAAATTCT---TCACCCAT 1148
Query 248992 GCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTT 249051
||| | || || |||||||| || ||||| | | ||||||| ||| ||||| ||
Sbjct 1149 GCCTCCCCCACCCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTG 1208
Query 249052 CTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCG 249108
| | |||| |||| ||| | || || |||||||| || || | |||| ||
Sbjct 1209 GTCGACATGAAAGAGGACAGCATTGAGGGTATTTATGATACTCTCA---AGACCTGTGCC 1265
Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168
| ||| || || | ||||| || ||||| || |||| | ||||| || | ||
Sbjct 1266 ATGATCTCCAAGATGGCGGGTGGTATCGGCCTGAACGTCCACCGAATCCGTGCCACTGGC 1325
Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTT 249228
|| |||||| ||||| || || | | ||| || ||| | ||||| |||
Sbjct 1326 TCTTACATCGCTGGTACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTC 1385
Query 249229 GAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATG 249285
| ||| ||| ||| | || |||||| || | ||| || | || |||||
Sbjct 1386 AACAACACTGCCCGGTACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATC 1445
Query 249286 TATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGC 249345
|| | || |||||||| ||| | || |||||||| ||| || |||||| |||||
Sbjct 1446 TACCTTGAGCCCTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGC 1505
Query 249346 AACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405
|| ||| | | || || ||||| ||| | || ||| | |||| | ||||||
Sbjct 1506 AAGGAGGAGGTCCGCGCCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATG 1565
Query 249406 CGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437
|| ||| || |||| || ||||| ||
Sbjct 1566 AAGCGTGTCGAGAAGAACGGTGACTGGACCCT 1597
>seq19606
Length=336
Score = 96.9 bits (106), Expect = 7e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059
||| || ||| | || || |||| ||||| || || ||||||||||| |||||||| ||
Sbjct 312 CCTCCCCCATCTCCTCCTCTACGGCCCTCCAGGCACCGGCAAGACGTCGACCATCCTCGC 253
Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119
|| ||||| | | | ||| | |||||| | || ||||||||||| |||||
Sbjct 252 CCTCGCCCGCCGCATCTATGGCACCGCAAACATGCGCCAGATGGTGCTCGAGCTCAACGC 193
Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167
|| ||||| ||||| | ||||| || || || |||||||||| ||
Sbjct 192 CTCGGACGACCGCGGCATCGACGTGGTGCGGGAGCAGATCAAGACGTT 145
>seq1991
Length=6698
Score = 95.1 bits (104), Expect = 3e-14
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261
|| || ||||||||| || | || || |||||||| ||| ||||||| || || |||
Sbjct 1736 TGCCCCCCTTTCAAGATCATCATTCTCGACGAGGCCGACTCCATGACACAAGATGCCCAG 1677
Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321
||| || || |||| |||||||| || | | || || || ||| || | |||
Sbjct 1676 AGCGCACTGCGAAGAACAATGGAGACATACAGCAAGATCACTCGCTTCTGCTTGATCTGC 1617
Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGC 254381
||||| || | ||||||| |||||| ||| ||| ||| ||||||||||||||
Sbjct 1616 AACTATGTCACCCGAATCATCGACCCGCTCGCTAGTCGATGCAGCAAGTTTCGATTCAAG 1557
Query 254382 ACCCTCG 254388
| |||||
Sbjct 1556 AGCCTCG 1550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073477737365376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |