Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3424 143 3e-29 >seq3424 Length=5400 Score = 143 bits (158), Expect = 3e-29 Identities = 370/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 ||||| || ||| ||| ||||||||||| | | || | ||||| ||||| || || Sbjct 3921 CATGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGG 3862 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||||||||| || ||||| || ||||| || || | ||| |||||| Sbjct 3861 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 3802 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGC-TGTCATGT 33758 || || || || ||||||||||| | || | || || | || | | |||| || Sbjct 3801 ATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCTTGTCCTGG 3742 Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | || ||||| ||||||||||| | ||| || || || || ||||| || Sbjct 3741 ATCCATCGGATG-GCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTT 3683 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||| ||| || || | || || | || || || || | || || | Sbjct 3682 GAAGAGGTAGGTTCGTTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGT 3623 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || || ||||| || || ||||| || |||||||| |||| ||||||| || Sbjct 3622 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGAT 3563 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | ||||| || | | || || || || || || ||| ||| || Sbjct 3562 CTGGACCTCGCCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGC 3503 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054 || || || | | || | || | | ||||| | || | | || ||||| Sbjct 3502 GAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCA 3443 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | || ||| || |||| ||| | || || | ||||| || || ||||| ||||| Sbjct 3442 GTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTT 3383 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 3382 CTTGTACATCTGCCAGAT 3365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629652414588960