Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq3424 152 7e-32
>seq3424
Length=5400
Score = 152 bits (168), Expect = 7e-32
Identities = 372/558 (67%), Gaps = 8/558 (1%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
||||| || ||| ||| ||||||||||| | | || || ||||||||||| || ||
Sbjct 3921 CATGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGG 3862
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|| ||||| ||||||||||| || ||||| || ||||| ||||| | || ||||||
Sbjct 3861 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 3802
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGC-TGTCATGT 50136
|| || || || || |||||||| || || | || || | || | | |||| ||
Sbjct 3801 ATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCTTGTCCTGG 3742
Query 50137 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| | || ||||| ||||||||||| | ||| || || || || ||||| ||
Sbjct 3741 ATCCATCGGATG-GCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTT 3683
Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255
||||| ||| || || | || || | || || || || | || || |
Sbjct 3682 GAAGAGGTAGGTTCGTTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGT 3623
Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315
|| || || ||||| || || ||||| || |||||||| |||| ||||||| ||
Sbjct 3622 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGAT 3563
Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375
||| || || | ||||| || | | || || || || || |||||| ||| ||
Sbjct 3562 CTGGACCTCGCCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGC 3503
Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCA 50432
|| || || | | || | || | |||| || || | | || |||||
Sbjct 3502 GAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCA 3443
Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492
|| | || ||| || |||| ||| | || || | ||||| || || ||||| |||||
Sbjct 3442 GTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTT 3383
Query 50493 TTTATACATATTCCAGAT 50510
|| ||||| | ||||||
Sbjct 3382 CTTGTACATCTGCCAGAT 3365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718080416050480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |