Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq3424 248 1e-60
seq6553 161 1e-34
>seq3424
Length=5400
Score = 248 bits (274), Expect = 1e-60
Identities = 574/851 (67%), Gaps = 37/851 (4%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| ||||||| || ||||| | ||| ||| | |||||
Sbjct 3365 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTA 3424
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG-AGTTTATA-- 125135
|||||||| || |||| ||| | | || |||||| | || |||| |||| |
Sbjct 3425 TCCAAGGATCTCCACGACTGGAACAACCGCCTGACTG---CCGA-CGAGCAGTTCTTCGT 3480
Query 125136 -TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193
|| ||||| | |||||||| || | ||| || || ||||||||||| || || || ||
Sbjct 3481 CTCCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGTCGA 3540
Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253
|||||| ||| | || || |||| ||||| ||||| ||||| ||||
Sbjct 3541 G-CGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCA 3599
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313
|||| |||||| | ||||| || | ||||| || ||||||| ||||| || |
Sbjct 3600 TGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGAGC 3659
Query 125314 CG---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370
| ||||| | || ||||| ||||| || || || | || | ||| || || |
Sbjct 3660 CAGCTCAACGAACCTAC---CTCTTCAACGCCATTGAGACCATCCCCTGTATCCGCAAGA 3716
Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430
|||| | |||| || || |||||| | ||| | || || || | || | | || |
Sbjct 3717 AGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAACTCGTCCTTTGCTCAGCGTCTCG 3776
Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490
| || || || ||||| ||||| |||||||| ||| ||||| ||||||| ||||
Sbjct 3777 TCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 3836
Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550
|||||||||| || |||||||| || ||||| |||||| | || ||||| ||||
Sbjct 3837 TCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 3896
Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610
|||| || ||| ||||||| ||| | || | | | | | || | || ||
Sbjct 3897 AGGGTCTTCACACCGACTTTG-CATGC--CTCCTCCACTCCCACCT------CAAGGGCC 3947
Query 125611 GATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667
| ||||| | |||||||| |||| | ||||||||||| | || || || |
Sbjct 3948 GTGCCAGC---AAGCAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGG 4004
Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
|||| || ||||| |||| || | | || | ||||||||| | | || |||
Sbjct 4005 AGTTCCTGACCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGC 4064
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784
||||||| ||||| || || || || || || || | ||| || ||| | |
Sbjct 4065 AGTACATCGAGTTCGTCGCCGACCGCCTCCT---CGTCGCCCTCGGCAACGAGAAGGTCT 4121
Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844
|||| |||| || ||||| || |||||| | ||| || || | || ||||||||||
Sbjct 4122 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACT 4181
Query 125845 TTTTCGAGAAG 125855
| |||||||||
Sbjct 4182 TCTTCGAGAAG 4192
>seq6553
Length=2786
Score = 161 bits (178), Expect = 1e-34
Identities = 308/449 (69%), Gaps = 10/449 (2%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || || | ||| ||||| | || || |||||||| ||
Sbjct 1410 CAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCAGAT 1469
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || | || ||||||| ||| ||| || |||| || ||| | |||
Sbjct 1470 GTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGAC 1529
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052
|||| || |||||| | || ||| | ||||||||||| ||| || ||||||
Sbjct 1530 CTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGTG-- 1587
Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112
|||||| ||| ||||| ||| || || ||||||||| |||| |||| ||||| |||
Sbjct 1588 -ACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAG 1646
Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171
|| ||||| ||| || ||| | | |||| | || |||| | || |
Sbjct 1647 TTCGAGGCTCTTTACGAAAAGTATGAGAAGGCGGGCAAGGGTCGCAAGACCA--TGAAGG 1704
Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230
| |||| || ||| | |||||| | ||| ||| ||||| || | || | ||| |
Sbjct 1705 CCCAGAAGCTCTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCCTTCATGC 1764
Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290
|||||||||| | || ||||| |||||||| || ||||||||||| |||
Sbjct 1765 TCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGTAGCT 1824
Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTAC 97319
||||||| ||||| || ||| | ||||||
Sbjct 1825 CCAATCTCTGCACCGAGATTATCGAGTAC 1853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740864838698320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |