Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2352 140 7e-28
seq20342 96.9 8e-15
>seq2352
Length=6378
Score = 140 bits (154), Expect = 7e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || ||||| || || ||||| || || || | |||||||
Sbjct 1153 AGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCT 1212
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || |||||||| || || | ||| || ||||| || || || || || |||
Sbjct 1213 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1272
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| | || || || || | ||||||||| | || ||||| || || || |||
Sbjct 1273 TGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGACTCGACCTCCAGAGTGATGGTC 1332
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || ||||| ||||||||
Sbjct 1333 TTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1364
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || ||||| || || ||||| ||||||| |||||
Sbjct 1380 AAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTC 1439
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || || ||||| || || | ||||||||||||||| || ||||| || ||
Sbjct 1440 CTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTC 1499
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||| | ||| ||||| || | ||| ||| | ||| ||||| || || |||||
Sbjct 1500 CTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATAGT 1559
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || || || || || || || ||||||||
Sbjct 1560 CTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1592
Score = 104 bits (114), Expect = 5e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||||||||| ||||| | || |||| || || || || || || ||
Sbjct 1624 GTTGACTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCG 1683
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | ||| || |||||||| || || || ||||| || ||||| | ||
Sbjct 1684 GCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTG 1743
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || ||| || || ||||| || || |||||||||||||| || ||
Sbjct 1744 ACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTC 1803
Query 104543 TTTAC 104547
|| ||
Sbjct 1804 TTGAC 1808
Score = 86.0 bits (94), Expect = 1e-11
Identities = 125/174 (72%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || ||||| | || || || || || || ||
Sbjct 1899 GTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCG 1958
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | ||| || || || || || || || || ||||||||||| | ||
Sbjct 1959 GCGAAAATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 2018
Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| || | |||||| | ||| || ||||| || ||||| ||||| || ||
Sbjct 2019 ACATTGTCGATGGTATC-CGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGT 2071
>seq20342
Length=208
Score = 96.9 bits (106), Expect = 8e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| ||||| || || ||||| | || || | ||||| || || || || || || ||
Sbjct 3 TCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 62
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | ||| || || ||||| || || || || ||||||||||| || || |||||
Sbjct 63 ATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 122
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | ||| || || || ||||| || || || |||||||| || || || || ||
Sbjct 123 TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACG 182
Query 104549 AATATCTGCAT 104559
|| || |||||
Sbjct 183 AAGATTTGCAT 193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151088867409256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |