Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq20342 107 2e-18
seq1107 84.2 2e-11
>seq20342
Length=208
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || |||| || |||||||||||||||| ||| || |
Sbjct 2 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 61
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | ||||||||| ||| || | | ||||||||| ||| || ||| | |
Sbjct 62 GATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATT 121
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| | ||||| || | ||||||| ||||| || ||||| ||||| ||||| || |||||
Sbjct 122 CTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCAC 181
Query 48715 AAAAATCTGCAT 48726
|| || |||||
Sbjct 182 GAAGATTTGCAT 193
>seq1107
Length=10776
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
|| || ||||||||||| || |||||||| || || | || || | ||||| |||||
Sbjct 5553 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTCGAGCTG 5495
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || | | || | |||||||| || || | | ||||||||| || ||
Sbjct 5494 CTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 5435
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
||||| | | || ||||| |||| ||||||| ||||| || || || || ||
Sbjct 5434 GGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCC 5377
Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733
||||| || || ||||| ||||||||| || ||
Sbjct 5376 GTGAGGGTCTTGACAAAGATCTGCATCTTGCCT 5344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421143478432982
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |