Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq4200 104 4e-18
seq3614 98.7 2e-16
>seq4200
Length=4375
Score = 104 bits (114), Expect = 4e-18
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| | | ||||| |||||||| || ||||||||||| |||||
Sbjct 2844 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 2902
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| ||||||||||| || ||||||||| ||||||
Sbjct 2903 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 2943
Score = 84.2 bits (92), Expect = 3e-12
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| |||| ||| | |||| ||||||| || || |||| ||| |
Sbjct 2999 TGATCTACGAAGAGACCCGTGGTGTCCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACG 3058
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| |||||||| | || | ||||| |
Sbjct 3059 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTGGTCTACG 3118
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || ||||| | | || ||||| || |||||
Sbjct 3119 CCCTCAAGCGACAGGGCCGCACCCTCTACGGTTTCGGTGGTTAA 3162
>seq3614
Length=4554
Score = 98.7 bits (108), Expect = 2e-16
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| ||| ||| || || |||||||| || ||||||||||| || ||
Sbjct 906 GCCAAGCGCCACCGCAAGAT-TCTACGTGACAACATCCAGGGTATCACCAAGCCCGCCAT 848
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| |||||||| ||||| ||||||||| ||||||
Sbjct 847 CCGACGTCTCGCTCGTCGAGGTGGTGTCAAGCGTATCTCTG 807
Score = 84.2 bits (92), Expect = 3e-12
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| || | |||| | |||| ||||||| || || |||| ||| |
Sbjct 749 TGATCTACGAGGAGACCCGGGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACG 690
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| ||||| || | || ||||||| |
Sbjct 689 CCGTCACCTACACCGAGCACGCCAAGCGAAAGACCGTCACGTCGCTCGACGTCGTCTACG 630
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || |||||||| | | || ||||| || |||||
Sbjct 629 CCCTCAAGCGACAAGGCCGCACCCTCTACGGTTTCGGTGGTTAA 586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79056016010526
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |