Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq7665 158 2e-33
seq3424 131 3e-25
seq699 116 8e-21
>seq7665
Length=2656
Score = 158 bits (174), Expect = 2e-33
Identities = 434/658 (66%), Gaps = 9/658 (1%)
Strand=Plus/Minus
Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765
|||| ||||||||||||||||||||||| || | || ||||| || | |||||| ||||
Sbjct 1368 TGTCTGGTGGTTGGAAGATGAAGCTGGCTCTAGCCCGAGCCATGCTTCAGCGTGCTGATG 1309
Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825
|||| || || || || || |||||||| | || ||||| | || ||||| | |
Sbjct 1308 TCCTTCTCCTGGACGAACCTACCAACCATCTTGATGTTGCCAACATTGCGTGGCTCGAGA 1249
Query 279826 CCTACCTAACCAGTC-TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884
|||||| | | || | || || | | || ||||| ||||||||||||||||||
Sbjct 1248 ACTACCTCAAGACTCATCCAG-ATATCACCAGTCTGATTGTTTCTCACGACTCTGGCTTC 1190
Query 279885 CTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCAC 279944
|| || ||| | | | |||| ||||| |||| || |||||| | ||
Sbjct 1189 CTCGACAACGTCACCACCGACATCTACCACTACGAGCCCAACAAGAAGCTGGCTTGCTAC 1130
Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTG 280004
| ||||||||| |||| || || | | ||||| ||||| |||||| |||
Sbjct 1129 AAGGGCAACCTGGCTGCCTTTGTCGAGATCCGCCCCGAGGCCAAGAGCTACTACACTCTG 1070
Query 280005 AAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCA 280064
|| | ||| || | ||| | |||||| || || | ||| ||| ||| ||
Sbjct 1069 TCGGCCTCCAACGTCCAGTTCAAGTTCCCTCCCCCCGGTATCCTGACTGGCGTCAAGTCC 1010
Query 280065 AAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCA 280122
| | ||| || ||||| | | ||| ||| || | | || ||||| | ||||
Sbjct 1009 ATGACTCGTGCCATCATCCGCATGTCC--AACGTGTCGTACACGTACCCCAAGGCTCCCA 952
Query 280123 A-CATCTTCAGCA--GTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTG 280179
| | | || ||| ||| | ||| | | || || || ||| ||||||
Sbjct 951 AGCCTTCTCTGCATGAGGTCTCTTGCCAGCTGACACTGTCGTCCCGTGTTGCCATCATTG 892
Query 280180 GACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCA 280239
| ||||| || || || ||||||||||| ||||| | || || ||||||||| | |
Sbjct 891 GCCCCAACGGAGCTGGCAAGTCTACCCTGATCAAGTTGCTCACCGGCGAGACCATTCCTA 832
Query 280240 CTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTT 280299
|| || || |||||| |||||| |||| || | ||| || |||||||||
Sbjct 831 CTACCGGAAAGGTCGAGAAGCACCCCAACTTGCGTATCGGCTACATCAAGCAGCACGCTC 772
Query 280300 TCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357
| | ||| |||||| || || || | ||| || ||||| ||| |||||||||| ||
Sbjct 771 TGGAGCACGTCGAGATGCATCTCGAGAAGACCCCCAACCAGTACCTTCAGTGGCGTTA 714
>seq3424
Length=5400
Score = 131 bits (144), Expect = 3e-25
Identities = 384/586 (66%), Gaps = 17/586 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| |||
Sbjct 4188 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 4129
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| ||| | ||| || || |||| || |||||| || || ||||| |
Sbjct 4128 GCCTTGTAGACCTTCTCGTTGCCGAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATG 4069
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| ||| || || | ||||||||| | || || || | ||||| | |
Sbjct 4068 TACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGG 4009
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798
|| |||| || ||| || || || | || ||| | ||||| | | | |
Sbjct 4008 AACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTGGATGACCTGCTTGCTGGCA 3949
Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858
| || || || | |||| ||||| |||| | ||| |||||||||||
Sbjct 3948 CGGC----CCTTGAGGTGGGAGTGGAGGAGGCATGCAAAGTCGGTGTGAAGACCCTCGTC 3893
Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918
||| ||||| ||||||||| | |||||||||||| | ||||| ||| |||||||
Sbjct 3892 ACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCA 3833
Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978
|||||| | | ||||| || ||| | | ||||||||| | | || || ||
Sbjct 3832 GAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAG 3773
Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032
|||| |||||| || ||||||||| || | | || ||||| | |||||
Sbjct 3772 ACGCTGAGCAAAGGACGAGTTCTTGTCCTG-GA-TCCATCGGATG-GCCCAGTCGGCCTT 3716
Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092
||| | | |||||| || || || || | ||||| || | || | || ||
Sbjct 3715 CTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTCGTTGAGCTGGCTC 3656
Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138
|| |||| | |||| ||||| ||||| |||| || ||||||
Sbjct 3655 CTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATG 3610
>seq699
Length=13526
Score = 116 bits (128), Expect = 8e-21
Identities = 178/251 (71%), Gaps = 2/251 (1%)
Strand=Plus/Minus
Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375
||| ||| || ||| |||| ||| ||||||||||| || ||||| |||||| |
Sbjct 4422 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACTTTCTCTC 4363
Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435
| || || |||| ||||||||||| ||| || | |||| | ||||||||||| | |
Sbjct 4362 TTGCCTACGGTGCCAAGATTCTGCTCAACCAGACTCACCTCCGCCTCAAGCGTGGCCAGC 4303
Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495
| || ||||| ||||||||| || | || ||| |||||| ||||| ||||| |
Sbjct 4302 GCTACGGTCTTTGCGGTCCCAACGGTTCCGGCAAGTCCACTCTCATGCGTGCCATCAACA 4243
Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554
||| ||| | | ||| ||||| | ||| ||||| | ||| || | || ||||||
Sbjct 4242 ACGAGCAGGTTG-AGGGTTTCCCCAAGCAGAGCGAGGTCAAGACCGTCTTCGTCGAGCAC 4184
Query 279555 GACATCGACTC 279565
||| | |||||
Sbjct 4183 GACCTGGACTC 4173
Score = 109 bits (120), Expect = 1e-18
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || |||| ||||| || ||||| ||||| || ||||| ||||| ||||| |||||
Sbjct 3578 CTCCCGTATTGCCGTCATCGGTCCCAACGGTGCCGGCAAGTCCACCCTCATCAACGTCCT 3519
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279
||||| ||| | |||| ||||| | | |||| ||||| || || ||
Sbjct 3518 CACTGGTGAGCTCATCCCCACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 3459
Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339
||| || |||||||||||| |||||||| ||||||||||||| ||| || | |
Sbjct 3458 CTACATCAAGCAGCACGCTTTCGCTCACATCGATAACCACCTGGACAAGACCCCCTCCGA 3399
Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
||||| |||||||| | | || | ||| |||||| ||| | |||| ||
Sbjct 3398 GTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 3348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027560484705862
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |