Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7665 158 2e-33 seq3424 131 3e-25 seq699 116 8e-21 >seq7665 Length=2656 Score = 158 bits (174), Expect = 2e-33 Identities = 434/658 (66%), Gaps = 9/658 (1%) Strand=Plus/Minus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| ||||||||||||||||||||||| || | || ||||| || | |||||| |||| Sbjct 1368 TGTCTGGTGGTTGGAAGATGAAGCTGGCTCTAGCCCGAGCCATGCTTCAGCGTGCTGATG 1309 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 |||| || || || || || |||||||| | || ||||| | || ||||| | | Sbjct 1308 TCCTTCTCCTGGACGAACCTACCAACCATCTTGATGTTGCCAACATTGCGTGGCTCGAGA 1249 Query 279826 CCTACCTAACCAGTC-TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| | | || | || || | | || ||||| |||||||||||||||||| Sbjct 1248 ACTACCTCAAGACTCATCCAG-ATATCACCAGTCTGATTGTTTCTCACGACTCTGGCTTC 1190 Query 279885 CTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCAC 279944 || || ||| | | | |||| ||||| |||| || |||||| | || Sbjct 1189 CTCGACAACGTCACCACCGACATCTACCACTACGAGCCCAACAAGAAGCTGGCTTGCTAC 1130 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTG 280004 | ||||||||| |||| || || | | ||||| ||||| |||||| ||| Sbjct 1129 AAGGGCAACCTGGCTGCCTTTGTCGAGATCCGCCCCGAGGCCAAGAGCTACTACACTCTG 1070 Query 280005 AAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCA 280064 || | ||| || | ||| | |||||| || || | ||| ||| ||| || Sbjct 1069 TCGGCCTCCAACGTCCAGTTCAAGTTCCCTCCCCCCGGTATCCTGACTGGCGTCAAGTCC 1010 Query 280065 AAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCA 280122 | | ||| || ||||| | | ||| ||| || | | || ||||| | |||| Sbjct 1009 ATGACTCGTGCCATCATCCGCATGTCC--AACGTGTCGTACACGTACCCCAAGGCTCCCA 952 Query 280123 A-CATCTTCAGCA--GTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTG 280179 | | | || ||| ||| | ||| | | || || || ||| |||||| Sbjct 951 AGCCTTCTCTGCATGAGGTCTCTTGCCAGCTGACACTGTCGTCCCGTGTTGCCATCATTG 892 Query 280180 GACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCA 280239 | ||||| || || || ||||||||||| ||||| | || || ||||||||| | | Sbjct 891 GCCCCAACGGAGCTGGCAAGTCTACCCTGATCAAGTTGCTCACCGGCGAGACCATTCCTA 832 Query 280240 CTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTT 280299 || || || |||||| |||||| |||| || | ||| || ||||||||| Sbjct 831 CTACCGGAAAGGTCGAGAAGCACCCCAACTTGCGTATCGGCTACATCAAGCAGCACGCTC 772 Query 280300 TCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 | | ||| |||||| || || || | ||| || ||||| ||| |||||||||| || Sbjct 771 TGGAGCACGTCGAGATGCATCTCGAGAAGACCCCCAACCAGTACCTTCAGTGGCGTTA 714 >seq3424 Length=5400 Score = 131 bits (144), Expect = 3e-25 Identities = 384/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 4188 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 4129 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | ||| || || |||| || |||||| || || ||||| | Sbjct 4128 GCCTTGTAGACCTTCTCGTTGCCGAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATG 4069 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || || | ||||||||| | || || || | ||||| | | Sbjct 4068 TACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGG 4009 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || ||| || || || | || ||| | ||||| | | | | Sbjct 4008 AACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTGGATGACCTGCTTGCTGGCA 3949 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | || || || | |||| ||||| |||| | ||| ||||||||||| Sbjct 3948 CGGC----CCTTGAGGTGGGAGTGGAGGAGGCATGCAAAGTCGGTGTGAAGACCCTCGTC 3893 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | |||||||||||| | ||||| ||| ||||||| Sbjct 3892 ACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCA 3833 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | ||||| || ||| | | ||||||||| | | || || || Sbjct 3832 GAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAG 3773 Query 251979 GCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||| |||||| || ||||||||| || | | || ||||| | ||||| Sbjct 3772 ACGCTGAGCAAAGGACGAGTTCTTGTCCTG-GA-TCCATCGGATG-GCCCAGTCGGCCTT 3716 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||| | | |||||| || || || || | ||||| || | || | || || Sbjct 3715 CTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTCGTTGAGCTGGCTC 3656 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| ||||| ||||| |||| || |||||| Sbjct 3655 CTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATG 3610 >seq699 Length=13526 Score = 116 bits (128), Expect = 8e-21 Identities = 178/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||| || ||| |||| ||| ||||||||||| || ||||| |||||| | Sbjct 4422 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACTTTCTCTC 4363 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 | || || |||| ||||||||||| ||| || | |||| | ||||||||||| | | Sbjct 4362 TTGCCTACGGTGCCAAGATTCTGCTCAACCAGACTCACCTCCGCCTCAAGCGTGGCCAGC 4303 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| ||||||||| || | || ||| |||||| ||||| ||||| | Sbjct 4302 GCTACGGTCTTTGCGGTCCCAACGGTTCCGGCAAGTCCACTCTCATGCGTGCCATCAACA 4243 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | | ||| ||||| | ||| ||||| | ||| || | || |||||| Sbjct 4242 ACGAGCAGGTTG-AGGGTTTCCCCAAGCAGAGCGAGGTCAAGACCGTCTTCGTCGAGCAC 4184 Query 279555 GACATCGACTC 279565 ||| | ||||| Sbjct 4183 GACCTGGACTC 4173 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| ||||| || ||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 3578 CTCCCGTATTGCCGTCATCGGTCCCAACGGTGCCGGCAAGTCCACCCTCATCAACGTCCT 3519 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | |||| ||||| | | |||| ||||| || || || Sbjct 3518 CACTGGTGAGCTCATCCCCACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 3459 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||||| ||||||||||||| ||| || | | Sbjct 3458 CTACATCAAGCAGCACGCTTTCGCTCACATCGATAACCACCTGGACAAGACCCCCTCCGA 3399 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 3398 GTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 3348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027560484705862