Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3424 268 9e-67 seq1107 125 7e-24 seq2352 122 9e-23 seq20342 120 3e-22 seq7999 114 1e-20 >seq3424 Length=5400 Score = 268 bits (296), Expect = 9e-67 Identities = 566/831 (68%), Gaps = 29/831 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 4191 TTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 4132 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| ||| | |||||| || ||||||| || | |||||| |||||| Sbjct 4131 GTGGCCTTGTAGACCTTCTCGTTGCCGA---GGGCGACGAGGAGGCGGTCGGCGACGAAC 4075 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 |||||||| ||| |||| ||| || | || ||||| |||| || || || || Sbjct 4074 TCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCAGGGG-AGGGCCTC 4016 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCC---TAACGCGC-- 132855 ||| || || ||||| |||| ||| || ||||||| ||| ||| | || || Sbjct 4015 GGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTGGATGACCTGCTT 3956 Query 132856 GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAG 132915 || | || ||||| ||| | || | | | ||| ||||||||| || | Sbjct 3955 GCTG-GCACGGCCCTTG----AGGTGGGAGTGGAGGAGGCATGCAAAGTCGGTGTGAAGA 3901 Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 |||||||| | || ||||| |||||| || |||| ||| ||||||||||| || || Sbjct 3900 CCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTTC 3841 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 |||||||| || |||| ||| || || ||||||| ||||||||||| || || Sbjct 3840 TTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAG 3781 Query 133036 GCCACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATT 133093 || || || |||| | || | | ||||| | |||| ||||| || | ||||| | Sbjct 3780 GCGACGAGACGCTGAGCAAAGGACGAGTTCTTGTCCTGG--ATCCATCGGATGGCCCAGT 3723 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153 ||||||| | || || || || || || |||||||| || | | || ||| | Sbjct 3722 CGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAG--GTAGGTTCGTTG 3665 Query 133154 CCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTC 133211 || | | ||||||||| |||||| ||| || | || ||||| | |||||| Sbjct 3664 AGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTC 3605 Query 133212 CATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAA 133271 ||| ||| || |||||||| ||||| || |||||| | ||| || || ||| Sbjct 3604 CATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGATCTGGACCTCGCCGCTGAA 3545 Query 133272 ACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTG 133331 |||||||| || || ||||||||||||||||| ||| ||||| ||||| || | ||| Sbjct 3544 TCGCTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGCGAAGAAGGCGAGGATGTG 3485 Query 133332 CTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGA 133388 || ||| |||||| | | ||| ||| | ||||||| | |||||||| Sbjct 3484 GGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCCTTGGA 3425 Query 133389 CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || | ||||||| | ||||| || || |||||||| || |||||||| Sbjct 3424 TAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 3374 >seq1107 Length=10776 Score = 125 bits (138), Expect = 7e-24 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || |||||||| || || |||||| |||| || ||| | Sbjct 5348 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 5407 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| |||| Sbjct 5408 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 5466 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||| ||||| || || | |||||||| | |||||| Sbjct 5467 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 5526 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || || || |||| || || Sbjct 5527 CAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTCCTCCG 5565 >seq2352 Length=6378 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || |||||| | || || || | || Sbjct 1592 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACCCTTGAGGTGGAATCGTCC 1533 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| || |||| ||||| || || ||||| | || ||| Sbjct 1532 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1473 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||||| || |||| || || |||| |||||||||| Sbjct 1472 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 1413 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| ||||| |||| || ||| || | || || Sbjct 1412 ATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGG 1366 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || |||||||| | || |||||| | | | Sbjct 1364 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGAGC 1305 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | ||||| ||||| || ||| | ||||| Sbjct 1304 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 1246 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| |||| |||||||| ||||||||| Sbjct 1245 GCAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAA 1186 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || ||| | || || ||| | | ||||| Sbjct 1185 CATCCAGAAGGAGTCGACCCTTCATCTTGTTCTCCGTCTCCGTGGCGG 1138 Score = 102 bits (112), Expect = 8e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 |||||||| ||||| ||| |||| |||||| || | || | | | | | | || Sbjct 2071 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 2012 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| || ||| ||||||| ||||| || |||| ||| ||||| Sbjct 2011 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATTTTCGCCGGCAAG 1952 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || || | ||||| ||| ||| ||||||||||| ||||| |||| || || Sbjct 1951 CAGCTTGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTCGACCCTCCA 1893 >seq20342 Length=208 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || |||||||| || ||||||||| |||| || ||| | | Sbjct 193 ATGCAAATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCG 134 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| ||||| || || | ||||| Sbjct 133 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 74 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| |||| |||||||| ||||||||| Sbjct 73 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCGGACTACAAC 14 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 13 ATCCAGAAGGA 3 >seq7999 Length=1671 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 169 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 228 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| || Sbjct 229 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACTG 288 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| |||||||| || | || ||||| ||||||||||||||| ||| Sbjct 289 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAAG 348 Query 38433 G 38433 | Sbjct 349 G 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500041617178880