Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6553 251 9e-62 seq3424 132 6e-26 seq7198 91.5 2e-13 >seq6553 Length=2786 Score = 251 bits (278), Expect = 9e-62 Identities = 973/1509 (64%), Gaps = 51/1509 (3%) Strand=Plus/Plus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCA-AAGACTGGATGGTGTCTTGAT 111604 || ||||| ||||||| || ||| | |||||||| |||| || |||| | | Sbjct 981 TACTTTGGCTTCAAGACTCTTGAGCGATCCTACCTCCTCAAGATTG-ATGGCAAGATTGT 1039 Query 111605 GGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGA 111664 || || ||| ||||| ||||||| || | |||| ||| || || |||||||| Sbjct 1040 TGAGCGTCCCCAGCACATGATCATGCGTGTGTCTGTCGGCATCTGGGGTGACGATATTGA 1099 Query 111665 TTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAAC 111724 ||| ||||||| ||| || |||||| | | |||| ||| || | || || Sbjct 1100 GCGTGTCCTGGAGACCTACAACCTGATGTCGAGCAAATTCTTCACCCATGCCTCCCCCAC 1159 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 ||||||||| |||||||| || || || ||||| || ||||| | | | || Sbjct 1160 CCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTGGTCGACATGAA 1219 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 ||||| || | || ||||| | ||||||| |||||| ||||| ||| Sbjct 1220 AGAGGACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATCTCCAAGAT 1279 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGG 111904 ||| ||||||||||| || || |||| || | |||| ||| || || Sbjct 1280 GGCGGGTGGTATCGGCCTGAACGTCCACCGAATCCGTGCCACTGGCTCTTACATCGCTGG 1339 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 ||| || ||| || | ||| | | || |||||||| || || ||| ||| || || Sbjct 1340 TACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTCAACAACACTGCCCG 1399 Query 111965 CTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCC 112018 || || |||| | ||| |||| || || | || |||| |||||||| Sbjct 1400 GTACGTCGACCAGGGTGGCAA---CAAGCGACCTGGTGCCTTTGCCATCTACCTTGAGCC 1456 Query 112019 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGC 112078 |||||||| ||| || | ||||||||||| |||| ||||| || | ||||||| Sbjct 1457 CTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGT 1516 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 || |||||| || ||| |||||||||||||| ||||||||||||||| | || || Sbjct 1517 CCGCGCCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGA 1576 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCG 112197 | ||| || | ||| | ||| | ||||| || || |||||||| |||| ||| Sbjct 1577 GAAGAACGGTGACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTA 1636 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG------AAAGTCGGGCGA 112251 | || |||||||| || || || ||| |||||| ||| | | | |||| || Sbjct 1637 T-GGCGAGGAGTTCGAGGCTCTTTACGAAAAGTATGAGAAGGCGGGCAAGGGTCGCAAGA 1695 Query 112252 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 | || || |||| || | ||| | || || ||| || | || |||||||| | Sbjct 1696 CCATGAAGG-CCCAGAAGC-----TCTGGTATGCCATCCTCGAGGCGCAGACCGAGACCG 1749 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 | | || | ||||| ||||| ||| ||| |||| ||||| || || ||||| ||| Sbjct 1750 GCAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGG 1809 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 | ||| || ||||| ||||| || || || | || | | | |||||| Sbjct 1810 GCACCATCCGTAGCTCCAATCTCTGCACCGAGATTATCGAGTACTGCGCCCCTGATGAGG 1869 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 112491 ||||| || ||||| || || | || || || | || || || || | || Sbjct 1870 TTGCTGTCTGCAACCTTGCTTCTCTGGCCCTGCC----TTCGTTCAT-CAACTACGATGA 1924 Query 112492 CATTTGATTATG------AAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 ||| |||| | || | ||||| || || | |||| ||||| | Sbjct 1925 TGCTTG-CTATGACTTCCAGAAGTTGCACGACGTCACACAGGTTGTCGTTCGCAACCTGA 1983 Query 112546 ACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGAC 112605 |||| |||| || || ||||| ||| | ||||| || || ||| ||| Sbjct 1984 ACAGGATTATCGACGTGAACCACTACCCTGTTACGGAAGCTCGCAACAGCAACATGCGAC 2043 Query 112606 ACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCAC 112664 |||| || |||||| | |||||||| ||||| || |||| ||| || || || || || Sbjct 2044 ACCGACCCATTGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCTCTG-CG-CAT 2101 Query 112665 GCATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCA 112723 || ||| || || ||| || || |||| || || || ||||| || || || Sbjct 2102 GCCTTTCGAGTCTCCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCA 2161 Query 112724 CGCCGCTCTTGAGGCGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 112780 || || || || ||||| || |||| ||| || ||||| || ||||| Sbjct 2162 TGCTGCCCTCACTGC---TTCGGTGCAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTT 2218 Query 112781 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA 112840 |||| ||||| || || | || | || || || || |||| |||| |||| | | Sbjct 2219 CAAGGGCTCTCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGT-GGAATGTGA-AGCCT 2276 Query 112841 GCT--TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 112898 || | || |||||||| |||| ||| | |||||||| | || |||| ||| Sbjct 2277 TCTGACCTCTGGGACTGGGAGAACCTCAGGGAGCAGGTCAAGGAGCACGGCATTCGCAAC 2336 Query 112899 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 112958 ||||| || | || || ||||| || ||| || | || ||| |||| || || || Sbjct 2337 AGTCTGCTGCTTGCCCCTATGCCTACTGCCAGTACTTCGCAGATCCTGGGCAACAACGAG 2396 Query 112959 TGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTG 113018 ||||| || || ||||| | |||||||| | | | | |||||| || ||||| | Sbjct 2397 TGCTTCGAGCCTTACACCTCCAACATCTACCAGCGCCGTGTCCTCGCTGGCGAGTTCCAG 2456 Query 113019 ATTGTCAAC 113027 | |||||| Sbjct 2457 GTCGTCAAC 2465 >seq3424 Length=5400 Score = 132 bits (146), Expect = 6e-26 Identities = 204/286 (71%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCA 102106 ||||| |||| || || ||||| ||| | | ||| | | ||||| | ||||| | Sbjct 3635 CTCATTGACACCTACATCAAGGAGCCAGCTCA-ACGAACCTACCTCTTCAACGCCATTGA 3693 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 102165 || | || ||||| | ||||| || || ||||| || ||| | | |||| Sbjct 3694 GACCATCCCCTGTATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAA 3753 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | ||| |||||||| |||| ||| |||| ||||| || ||||||||||||||| | Sbjct 3754 CTCGT-CCTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCG 3812 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 || |||| | | || | |||||||||||||| || |||||||| || || ||| | Sbjct 3813 GTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTT 3872 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||||| ||||||||||||||||| || ||| || ||||| Sbjct 3873 CCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 3918 >seq7198 Length=2820 Score = 91.5 bits (100), Expect = 2e-13 Identities = 302/461 (66%), Gaps = 18/461 (4%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || || || || | | || | || || ||||| | || || || || Sbjct 1711 CGATCAAATCGTCCAGGTCGCATCAAGGCCTTGTCGAGCATATCCGCTCGGTTGGTACCG 1652 Query 15945 GCGATGACAACAATACCTGTTTC--GTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | ||| |||| |||| | | | | | ||||| |||||||| |||| || ||||| Sbjct 1651 GCCAGGACGACAA--CCTGCTCCCGGGTGTTGAAACCGTCCATCTCGGTCAGAATCTGGT 1594 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGC---GTTGCTTTC 16059 | | ||| ||||| || || || | | ||| | |||| || || || Sbjct 1593 TCAGAGTCGCCTCCCGCTCGTCGTTGCCACCGAAACCCCGGCCACTCTCCTGTCGCGCTC 1534 Query 16060 ---CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT 16116 | | ||| || |||||||| || |||| |||||| || || | || | | Sbjct 1533 GACCAATGGCGTCGATCTCATCGATAAAGATGATGCAAGGAGCGTTCTTACGGCCTTCGG 1474 Query 16117 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 | || || || || ||||| | || ||||||||||||||||| || || | | Sbjct 1473 CGAACAGGTCTCGCACACGGGAAGGACCAACACCAACAAACATCTCGACGAATTCAGAAC 1414 Query 16177 CGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 || ||| || | ||||||||| ||| || || || | || |||||| | ||| Sbjct 1413 CGCTCACACTGAA-GAAGGGGACTCCAGACTCGCCAGCTGTAGCCTTGGCGAGCAATGTC 1355 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC 16293 ||||||||||| || || || || | ||| ||||| ||||||||||| || |||| Sbjct 1354 TTACCCGTACCAGGGGGGCCAGCCAGAATGGCTCCTCGGGGAATCTTGGCACCGAGCTTC 1295 Query 16294 -CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 |||| | |||| || ||||| || || ||||| ||| Sbjct 1294 TCAAACT---TCTCGGGCTGCTTCAGGAAGCTCACAAACTC 1257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620579594787040