Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6553 206 3e-48 >seq6553 Length=2786 Score = 206 bits (228), Expect = 3e-48 Identities = 922/1437 (64%), Gaps = 39/1437 (3%) Strand=Plus/Minus Query 105895 GTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGG 105954 |||||| | | ||||| || |||||| | | | | |||||||| | ||||| || Sbjct 2465 GTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGG 2406 Query 105955 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 106014 || ||||| || || || |||| ||| || | || ||| || ||||| || || | Sbjct 2405 CTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAG 2346 Query 106015 CAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 106074 || |||||||| |||| || | ||||||| | ||| |||| |||||||| | Sbjct 2345 CAGCAGACTGTTGCGAATGCCGTGCTCCTTGACCTGCTCCCTGAGGTTCTCCCAGTCCCA 2286 Query 106075 GTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGA 106132 | | || || ||||| |||| |||| || || || || | || | || | |||| Sbjct 2285 GAGGTCAGAA-GGCTTCACATTCC-ACATGTCGAACTGGAGAATACCCTCAGAGGCGGGA 2228 Query 106133 GAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAG 106191 || |||| || || |||| ||| | | | |||| | ||| | || || Sbjct 2227 GAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTGCACCGAA-GCAGTGAG 2169 Query 106192 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC 106251 || || || || ||||| || ||||| | || | ||| || || || || Sbjct 2168 GGCAGCATGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGAGACTC 2109 Query 106252 -AAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 106309 ||| || | ||| || | || || |||| || ||||| || ||||| | |||||| Sbjct 2108 GAAAGGCAT-GCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCAATG 2051 Query 106310 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 106369 |||| ||||||||| || || || || | ||| || || || ||| || Sbjct 2050 GGTCGGTGTCGCATGTTGCTGTTGCGAGCTTCCGTAACAGGGTAGTGGTTCACGTCGATA 1991 Query 106370 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 106429 | | ||| || || |||| || ||||| || || | || | | ||| | Sbjct 1990 ATCCTGTTCAGGTTGCGAACGACAACCTGTGTGACGTCGTGCAACTTCTGGAAGTCATA- 1932 Query 106430 GTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACA 106486 || || || || | ||| || || ||||| | || || | ||||| ||| Sbjct 1931 --GCAAGCATCATCGTAGTTGATGAACGAAGGCAGGGCCAGAGAAGCAAGGTTGCAGACA 1874 Query 106487 GCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATC 106546 || |||||| | |||||| | ||| || || || | ||||| || || Sbjct 1873 GCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAGAGATTGGAGCTACGGATG 1814 Query 106547 GTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGC 106606 || |||| ||||| ||||| ||||| |||||| ||||||||||||||| |||| Sbjct 1813 GTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGG 1754 Query 106607 GTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAAT 106665 | || ||||| ||||| | || ||| || || | ||| | | || | | || || Sbjct 1753 TTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCT----TCAT 1698 Query 106666 GGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACC 106722 || ||| | || | ||| || ||| |||||| ||| || || || |||||||| | Sbjct 1697 GGTCTTGCGACCCTTGCCCGCCTTCTCATACTTTTCGTAAAGAGCCTCGAACTCCTC-GC 1639 Query 106723 CACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT 106781 || || ||||| ||||| || || || ||||| | || | ||| | ||| || Sbjct 1638 CATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACATGAGGGTCCAGTCACCGTTCT 1579 Query 106782 CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACC 106841 ||| || ||||||||||| || || |||||||| || | || || || | | Sbjct 1578 TCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGC 1519 Query 106842 GAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCC 106901 | |||| || | || ||||| || | ||||||||||| | || ||| ||||||| Sbjct 1518 GGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCC 1459 Query 106902 ATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGACGCCCAGCTTGATTTACAT 106955 | |||||||| |||| || | || || ||| | | ||| | || | || | Sbjct 1458 AGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTT--GTTG-CCACCCTGGTCGACGT 1402 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 | || || ||| ||| || || |||||||| || | | ||| | || ||| || | Sbjct 1401 ACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGAGGTACCGTTGG 1342 Query 107016 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 107075 | || || ||| | |||| | | |||| || || || ||||| || | Sbjct 1341 TACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCCGATACCACCCG 1282 Query 107076 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 107135 || ||| ||||| ||||| | | ||||| |||| ||||| | || ||||| Sbjct 1281 CCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTCAATGCTGTCCT 1222 Query 107136 CCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGA 107195 | || || ||| |||||||| ||||| ||| || || |||||||||||||||| Sbjct 1221 CTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACCAGCATTGAAGA 1162 Query 107196 GGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 107253 |||| || | || || |||| | | || |||||| || ||| ||||||| ||| Sbjct 1161 GGGTGGGGGAGGCATGGGTGAAGAATTTGCT--CGACATCAGGTTGTAGGTCTCCAGGAC 1104 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | ||||| || || || |||||||| | ||||||||| | ||||| ||||| Sbjct 1103 ACGCTCAATATCGTCACCCCAGATGCCGACAGACACACGCATGATCATGTGCTGGGG 1047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589826062785680