Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq2352 154 3e-32
seq20342 127 5e-24
seq7999 125 2e-23
seq1107 120 7e-22
seq6553 84.2 5e-11
>seq2352
Length=6378
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| ||||| ||||| ||||| || || || ||||| ||| ||||||| || || ||
Sbjct 1383 AACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTC 1442
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || || ||||| ||||| ||||| || |||||||||||||| ||||| ||
Sbjct 1443 GAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTG 1502
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || || || || ||||||||||| || |||||| |||||||| | |||||
Sbjct 1503 GATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATAGTCTT 1562
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || | || || ||||| | |||||
Sbjct 1563 TCCGGTGAGGGTCTTGACGAAGATCTGCAT 1592
Score = 143 bits (158), Expect = 6e-29
Identities = 151/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| ||||| || ||||||||||| ||||| || |||| ||||| ||
Sbjct 1612 ACGAGGTGGAGAGTTGACTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCCTCA 1671
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||| || || || || ||||| |||||||| || || || |||||
Sbjct 1672 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGG 1731
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || || ||||| ||| ||||| || ||||| | |||||
Sbjct 1732 ATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTA 1791
Query 195112 CCTGTCAAAGTTTTTACGA 195130
|| || | || || ||||
Sbjct 1792 CCAGTGAGGGTCTTGACGA 1810
Score = 129 bits (142), Expect = 1e-24
Identities = 157/213 (74%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||| ||||| || ||||| || || || ||||| |||| || || | || |||||
Sbjct 1155 AACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTC 1214
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||||| || ||||||||||| || ||||| || || ||||| || ||||| ||
Sbjct 1215 CAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 1274
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGT 195107
||| || ||| ||||| |||||||| || ||| || || || || || | ||
Sbjct 1275 AATCTTGGACTTCACGTTGTCAATGGTATCGCTCGA---CTCGACCTCCAGAGTGATGGT 1331
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||| || | ||| || || || | |||||
Sbjct 1332 CTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1364
>seq20342
Length=208
Score = 127 bits (140), Expect = 5e-24
Identities = 144/193 (75%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 194948 ACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGA 195007
|||| || || || ||||| || || || || | || || || |||||||| || ||||
Sbjct 1 ACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGA 60
Query 195008 AGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGT 195067
|||| || || || ||||| ||||| ||||| || ||||| ||||| || ||| || |
Sbjct 61 AGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACAT 120
Query 195068 TCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTA 195127
|||| |||||||||||| ||||| || ||||| | ||||| || || | || || |
Sbjct 121 TCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCA 180
Query 195128 CGAACACTTGCAT 195140
|||| | ||||||
Sbjct 181 CGAAGATTTGCAT 193
>seq7999
Length=1671
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||| |||| ||||| || |||||||| || ||||||||
Sbjct 347 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 288
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
||||| || ||||| || || ||||| || ||||| || || || |||||| || |||
Sbjct 287 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 228
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
||||||||||| || || || ||||| | ||||| || |||| || || |||||
Sbjct 227 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 169
>seq1107
Length=10776
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||| ||| || || || ||||| ||| || || | ||||| |||
Sbjct 5559 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 5500
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| ||||| || ||||| || || ||||| || ||||| ||
Sbjct 5499 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 5440
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || |||||||| ||| ||||| || ||||| | |||||
Sbjct 5439 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTC 5380
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || || || | |||||
Sbjct 5379 CCCGTGAGGGTCTTGACAAAGATCTGCAT 5351
>seq6553
Length=2786
Score = 84.2 bits (92), Expect = 5e-11
Identities = 182/267 (68%), Gaps = 8/267 (3%)
Strand=Plus/Plus
Query 160599 TCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCT 160658
|||||| | ||||||| ||||||||| | || | | || || || |||| ||| | |
Sbjct 1543 TCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGTGACTGGACCCTCATGT 1602
Query 160659 GTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATG 160718
||||||| || || || || | || ||||| ||||||||| ||||||| |
Sbjct 1603 GTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAGTTCGAGGCTCTTTACG 1662
Query 160719 AAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCAT 160777
||| || || || | ||| ||| | | || | | |||||||||| | || ||| ||
Sbjct 1663 AAAAGTATGAGAAGGCGGGCAAGGGTCGCAA-GACCATGAAGGCCCAGAAGCTCTGGTAT 1721
Query 160778 CACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATC 160837
|||||| | || || |||| || | ||||| || |||||||| ||| |
Sbjct 1722 GCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGA--CCA-C 1778
Query 160838 TGT---CGCAAGAGTAACCAGAAGAAC 160861
|| |||||||| ||||||||||||
Sbjct 1779 TGCAACCGCAAGAGCAACCAGAAGAAC 1805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109183335981194
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |