Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6553 448 9e-121 seq3424 206 5e-48 >seq6553 Length=2786 Score = 448 bits (496), Expect = 9e-121 Identities = 1238/1864 (66%), Gaps = 94/1864 (5%) Strand=Plus/Minus Query 212574 GCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCC---CTTGCCCCAGCCG 212630 || ||||||| || || || ||||||||||| ||||| ||||| ||| ||||||| Sbjct 2785 GCGGCAGCCTGCGTTCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTT---CCAGCCG 2729 Query 212631 TGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAG 212689 | |||||| |||| ||| |||| | || | |||| | | |||| Sbjct 2728 GCAAAGTGCAT-GCTGGTGA---TCTTGCCC---ATGGTGGGGTCCTTCATGTGG----- 2681 Query 212690 ATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTAT 212749 | ||| |||||||| ||| || ||||| | | | ||| || ||||| | | Sbjct 2680 ----ATGTTGAGGGACTGGGACTGATCAATGAAGGCACCTCGGTCGGCAGCCATCTGAAC 2625 Query 212750 GATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAA 212809 || | | ||| || | |||||| ||||||||| ||| | |||| || | |||| Sbjct 2624 GACCTGGCGCTGCGAAATCTCCCAGACGGTCTTGTAGAGGGCCTTGACCTCGGCGGGGAT 2565 Query 212810 GCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCA--GCTGCAGGCG--CATGTCCT 212865 | |||||||||||| | || || || | | | || | | | | |||| | | Sbjct 2564 GTTGGGGATGTTCTGGATGGAACC---GT-TCTCGGCAATGATTCGGTTTTTCATGGCAT 2509 Query 212866 CGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGT 212925 | ||| |||||| || | ||| ||||| ||| |||||||| | |||||| | Sbjct 2508 CCGACCACAGGCCCATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACT 2449 Query 212926 CACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGT 212985 | || | ||| || | | |||||| | ||| || ||||| ||||||| || |||||||| Sbjct 2448 CGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGT 2389 Query 212986 TCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCA 213045 | ||||| ||||| | ||| ||||| || ||||| || || | ||| |||||||| | | Sbjct 2388 TGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAA 2329 Query 213046 CTCCGTGCTCGCCGATGAGGCGCC-GAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCC 213104 |||||||| || | || || | ||| |||||||||| | |||| ||| Sbjct 2328 TGCCGTGCTCCTTGACCTGCTCCCTGAGGTTCT-CCCAGTCCCAGAGGTCAGA-AGG--- 2274 Query 213105 TCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCA----CGGGGCTGCC 213160 |||||| ||||||||||| ||||| | || || |||| |||| ||| Sbjct 2273 -----CTTCACATTCCACATGTCGAACTGGAGAATACC----CTCAGAGGCGGGAGAGCC 2223 Query 213161 CTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA-GGACGCCTGCAGGGCAG 213219 || | | | ||||||||| || | |||||||||||||| ||| || || ||||||| Sbjct 2222 CTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCT-GCACCGAAGCAGTGAGGGCAG 2164 Query 213220 CGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGG 213279 | | ||||||||| || || |||| | ||||||||| ||||| || ||| ||| | Sbjct 2163 CATGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGAGACTCGAAAG 2104 Query 213280 GCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGT 213339 |||| || |||| ||||||| || |||||||| || | || ||||||| || Sbjct 2103 GCATGCGCAGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCAATGGGTCGGT 2044 Query 213340 GTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTG 213398 ||| || ||| ||| |||| ||| | ||||| ||| |||||| ||| || Sbjct 2043 GTCGCATGTTGCTGTTGCGAGC-TTCCGTAACAGGGTAGTGGTTCACGTCGATAATCCTG 1985 Query 213399 TTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAG 213458 || |||||||| | | || | ||||| | | || ||| || ||| | ||| Sbjct 1984 TTCAGGTTGCGAACGACAACCTGTGTGACGTCGTGCA---ACTTCTG---GAAGTCATAG 1931 Query 213459 C------CCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCC 213512 | | ||| | | ||| ||||||||| | || |||||||| || || Sbjct 1930 CAAGCATCATCGTAGTTGATGAACGAAGGCAGGGCCAGAGAAGCAAGGTTGCAGACAGCA 1871 Query 213513 ACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTG 213572 ||||| | || | | |||||| || ||||||||||| || ||| || ||||||||| Sbjct 1870 ACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAGAGATTGGAGCTACGGATGGTG 1811 Query 213573 CCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGTAGGGGGA 213631 |||||||||| ||| ||| ||||| | |||| ||||||||||||||| ||||| Sbjct 1810 CCCAGGTTCTTCTGG-TTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTT 1752 Query 213632 CCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACC 213689 |||||||| ||| | | | || | |||| |||||| | | |||||| || Sbjct 1751 GCCGGTCTCGGTCTGCGCCTCGAGGA--TGGCATACCAGAGCTTCTGGGCCTT---CATG 1697 Query 213690 CGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCC 213749 | || | | | || ||| |||| |||||| || | | ||| || | ||| Sbjct 1696 GTCTTGCGACCCTTGCCCGCCTTCTCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCA 1637 Query 213750 CAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG-TCATC 213808 || | |||| || || || ||||||||||||| ||||||| ||| || || Sbjct 1636 TAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTC 1577 Query 213809 TCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCT 213868 || ||| | || |||||| || || || | ||| || || ||||||||| | || | Sbjct 1576 TC-GACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCG 1518 Query 213869 CCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCA 213928 ||| ||| || ||| |||||||| || || || ||||||| || |||||||| Sbjct 1517 GACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCA 1458 Query 213929 CGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCT 213985 ||||| | ||||||||||||||| || | || | ||||| |||||||| || || Sbjct 1457 GGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTACCG 1398 Query 213986 GGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCC 214045 ||| ||||||||| || || | ||| | |||||||| |||||||| || Sbjct 1397 GGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGAGGTACCGTTGGTACC 1338 Query 214046 CGCTATATACGAGCCGGAGGCCC---TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGC 214102 || || || ||||| | ||| | | ||| | | | || || || ||||| || Sbjct 1337 AGCGATGTAAGAGCCAGTGGCACGGATTCGGTGG---ACGTTCAGGCCGATACCACCCGC 1281 Query 214103 GTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 ||||||||||||||| ||| | | | ||| || || || | |||||||| || Sbjct 1280 CATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTCAATGCTGTCCTC 1221 Query 214163 TGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAG 214222 | | | || | || |||||| || ||||| ||| || | |||| ||||| || Sbjct 1220 TTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACCAGCATTGAAGAG 1161 Query 214223 CGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGA 214282 |||||| ||||||| | | || ||| | || | || |||||||||||||||| Sbjct 1160 GGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTCTCCAGGACACG 1101 Query 214283 GGGGATGTCGTGCTTGTGGATCTGTAGAG-CGCACCTCATCAGCATGTGCTGGGGCCTCT 214341 || |||| ||| | || | || | ||| | |||||||||||| | || Sbjct 1100 CTCAATATCGTCACCCCAGATGCCGACAGACACA-CGCATGATCATGTGCTGGGGACGCT 1042 Query 214342 CTATGGGTCCTTTGGGGCC---CTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAA 214398 | | || ||| | |||||| |||||||| ||||| ||||||||||| |||| Sbjct 1041 C-AACAATC--TTGCCATCAATCTTGAGGAGGTAGGATCGCTCAAGAGTCTTGAAGCCAA 985 Query 214399 AGTA 214402 |||| Sbjct 984 AGTA 981 >seq3424 Length=5400 Score = 206 bits (228), Expect = 5e-48 Identities = 487/729 (67%), Gaps = 11/729 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 4210 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTC 4151 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | | || | Sbjct 4150 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCT-TCTCGTTGCCGAGGGCGACGAGGA 4092 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | ||||||| | ||||||||| | |||| Sbjct 4091 GGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGG 4032 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | |||| || || ||||||| ||| || ||||| || | || | Sbjct 4031 CGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATGT 3972 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 || | | || || || | || | | | | || | ||| | ||| |||| Sbjct 3971 CCTGGATGACCTGCT-TGCTGGCACG--GCCCTTGAGGTGGGAGTGGAGGAGGCATGCAA 3915 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| |||| | || ||||| || ||||||| ||||||| ||| || ||||||| Sbjct 3914 AGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCA 3855 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| || | || ||||||||||| || | || || | || ||||||||| |||| Sbjct 3854 TGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCT 3795 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 | || || || || ||| ||| | || | || || | ||||||||| |||||| Sbjct 3794 CGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCTTGTCCTGGATCCATC 3735 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 | |||||||| |||||||| ||| || || || ||||| ||||| |||||| | Sbjct 3734 GGATGGCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAGGT 3675 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 | | | | ||| ||| | ||||| | |||| ||| | ||| |||| | Sbjct 3674 AGGTTCGTTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGC---GAGTAGGTCTCGG 3618 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || ||||||||| ||||||||| | |||||| | ||| | Sbjct 3617 AGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGATCTGGA 3558 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || | ||||| ||| | || ||||| ||||| || || || || ||||| |||| Sbjct 3557 CCTCGCCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGCGAAGA 3498 Query 48555 AGGCAAGGA 48563 |||| |||| Sbjct 3497 AGGCGAGGA 3489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931288482234880