Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6553 271 1e-67 seq3424 199 7e-46 >seq6553 Length=2786 Score = 271 bits (300), Expect = 1e-67 Identities = 846/1280 (66%), Gaps = 51/1280 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || |||||||| |||||||||||||| |||||| ||||||||| ||| | |||||||| Sbjct 2173 GTGAGGGCAGCATGGTAGATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 2115 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 ||| ||| ||||| ||||| | | ||||| | || || || ||||| || || | | Sbjct 2114 AGACTCGAAAGGCATGCGCAG-AGCAAGGAAAG-CATCAGCAAGACCCTGGACACCAACA 2057 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||||| | ||||| | ||| ||||| | || || || ||| | Sbjct 2056 CCAATGGGTCGGTGTCGCATGTTGCTGTTGCGA--GCTTCCGTAACAGGGTAGTGGTTCA 1999 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 ||||||| | |||| ||||| || || || | || ||| || ||||||| Sbjct 1998 CGTCGATAATCCTGTTCAGGTTGCGAACGACAACCTGTGTGACGTCGTGCAACTTCTGGA 1939 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | | ||| | | |||| || | | || || || ||||| | Sbjct 1938 AGTC--ATAGCAAG----CATCATCGT--AGTTGATGAACGAAGGC----AGGGCCAGAG 1891 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 || ||||| || || || ||||| || | | |||| || ||||| || |||| Sbjct 1890 AAGCAAGGTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAGA 1831 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCC 221830 | ||| || |||||| ||||||| || || || |||||| ||| ||| | ||| Sbjct 1830 GATTGGAGCTACGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCC 1772 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||||||||| ||||| ||| ||||| ||| ||| | || || | |||||| Sbjct 1771 TTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGC 1712 Query 221891 TCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCG---GTCTTTTCATACCCG--GTAT 221945 | ||||| || | | ||||| ||||| | | ||| |||||| ||| Sbjct 1711 T-TCTGGGCCTT--CATGGTCTTGCG---ACCCTTGCCCGCCTTCTCATACTTTTCGTAA 1658 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 ||||| | | |||| || || || ||| |||| || || ||| | |||||||| Sbjct 1657 AGAGCCT--CGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACA 1600 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | || |||||| ||| | | ||| | || ||||||||| || || ||||| || | Sbjct 1599 TGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAG 1540 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 || | || || || | || || ||||||| ||||| ||| || | ||| || | | Sbjct 1539 CCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGA 1480 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 ||||||| | || |||||||| ||||| || |||| ||| | || || |||||||||| Sbjct 1479 ACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTGT 1420 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 |||||||||| || | | | | ||| | |||||||| ||||| | || | Sbjct 1419 TGCCACCCTGGTCGA-CGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACA 1361 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302 |||||||| ||||||||| || ||||| | || ||| | || | | ||| Sbjct 1360 CCGTTGGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCAC---GGATTCGGTGG 1304 Query 222303 -CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 | || |||||||||||| || || ||||||||||| ||| |||||||||| || Sbjct 1303 ACGTTCAGGCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCA 1244 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 || ||||| || |||||| || | || | ||| || || || |||| ||||| Sbjct 1243 TAAATACCCTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGC 1184 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481 | || | || || || || || ||||| ||| || || ||| | || |||||| Sbjct 1183 TGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATC 1124 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCT 222540 || | ||| ||||| | ||| | | || | ||| ||| || | | | | || | Sbjct 1123 AGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGACAGACACA-CG 1065 Query 222541 CATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC--TGGAGAGCAGGTACGAT 222598 |||| ||||| |||||| | ||| ||| | | | | | | ||| ||||| ||| Sbjct 1064 CATGATCATGTGCTGGGGACGCTCAACA--ATCTTGCCATCAATCTTGAGGAGGTAGGAT 1007 Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658 || ||||||||||| |||||||| | | | ||||| | | | | || | ||| Sbjct 1006 CGCTCAAGAGTCTTGAAGCCAAAGTACTGGTATTGGAAGTCACGGTCATAGACAATGGCC 947 Query 222659 GCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 946 GAGTCTAGCTCCTCCTTGTG 927 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | |||||| | ||| || ||| | || Sbjct 2465 GTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGG 2406 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||||||||| | || ||||| || ||||| || || | Sbjct 2405 CTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAG 2346 Query 221236 CAGCAGACTGTTGCG 221250 ||||||||||||||| Sbjct 2345 CAGCAGACTGTTGCG 2331 >seq3424 Length=5400 Score = 199 bits (220), Expect = 7e-46 Identities = 559/857 (65%), Gaps = 24/857 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| |||||| ||||| ||||||||||| Sbjct 3365 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTA 3424 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| | ||| |||| || || || | ||||||||| || || Sbjct 3425 TCCAAGGATCTCCACGACTGGAACAACCGC-CTGACTGCCGACGAGCAGTTCTTCGTCTC 3483 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || |||||||| || || || |||||||| || |||| | Sbjct 3484 CCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGTCGAGCG 3543 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||||| | | || || ||| | |||||| || |||||||| |||||||| || Sbjct 3544 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGAT 3603 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || | ||| || || || ||||| | || Sbjct 3604 GGAGAACATCCACTCCGAGACCTACTC---GCTCCTCATTGACACCTACATCAAGGAGCC 3660 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || | || || || ||||| ||| ||| ||| | ||| | |||||| Sbjct 3661 AGCTCAACGAACCTACCTCTTCAACGCCATTGAGACCATCCCCTGTATCCGCAAGAAGGC 3720 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||||| |||||| | | ||| | | | |||| |||| || || || Sbjct 3721 CGACTGGGCCATCCGATGGATCCAGGACAAGAACTCGTCCTTTGCTCAGCGTCTCGTCGC 3780 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||||||||| || ||||| ||||| ||||||||| | ||||| |||||||||||||||| Sbjct 3781 CTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAA 3840 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || ||| ||||||||||||||||||| | |||||||| Sbjct 3841 GAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGG 3900 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--T 26067 ||| |||| || ||||| ||||| ||| || | |||| ||| | | | | Sbjct 3901 TCTTCACACCGACTTTGCATGCCTCCTCCACTC---CCAC---CTCAAGGGCCGTGCCAG 3954 Query 26068 CAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 |||| || | || | ||||||| || || || || ||| ||||||| | Sbjct 3955 CAAGCAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGAC 4014 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||| || ||||| || Sbjct 4015 CGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCGA 4074 Query 26187 GTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCT 26244 || || ||||||| || || || ||| || || || | |||||| | | Sbjct 4075 GTTCGTCGCCGACCGCCTCCTCGTCGCC--CTCGGCAACGAGAAGGTCTACAAGGCCACC 4132 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| ||||| || | | || |||||||||||||| || ||| Sbjct 4133 AACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAG 4192 Query 26305 AGGGTCGGCGACTATCA 26321 | ||||| ||||| || Sbjct 4193 CGTGTCGGTGACTACCA 4209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928601187230080