Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3424 147 6e-30
seq261 132 1e-25
seq6553 116 1e-20
seq2338 87.8 5e-12
>seq3424
Length=5400
Score = 147 bits (162), Expect = 6e-30
Identities = 248/354 (70%), Gaps = 4/354 (1%)
Strand=Plus/Plus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| ||||| ||| || || | ||||| |||||| || ||||| || || |
Sbjct 3567 CCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 3626
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423
| || || ||||| || |||||||| || | | || | | || || | ||||||
Sbjct 3627 ACTCGCTCCTCATTGACACCTACATCAAGGAGCCAGCTCA-ACGAACCTACCTCTTCAAC 3685
Query 133424 GCCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482
|||||| | || ||| ||||| ||||| | |||||||| || |||||||||
Sbjct 3686 GCCATT-GAGACCATCCCCTGTATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCA 3744
Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542
||||||| || |||||| |||||||| || ||||||| || ||||| || ||
Sbjct 3745 GGACAAGAACTCGTCCTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTT 3804
Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602
||||| ||||| || ||| || || ||||| || |||||||| | | ||||| ||
Sbjct 3805 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCT 3864
Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| ||||| ||||| || || || | ||||||| ||||||||||| |||||
Sbjct 3865 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 3918
>seq261
Length=22061
Score = 132 bits (146), Expect = 1e-25
Identities = 193/273 (71%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630
|||||| | | ||||| | || |||||||| ||||| || | || || || ||
Sbjct 2036 GTCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTAACCCGTCTCGGCGGTCTTGACCGC 2095
Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690
|||||||| ||||| | |||||| |||| || |||||||| | ||| || ||
Sbjct 2096 GGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGGAAGGAGTGAG 2155
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750
|| | || | | ||| |||| ||||||||||| || |||||||| | ||| ||||||
Sbjct 2156 ACCACGAAGATACGAGTTCTCGACGAAACCACGGGCTTCGGGCGAGTAATCGTCCTTGGT 2215
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
|| || ||||| || | || || | ||| | || |||||||| || || ||| ||||
Sbjct 2216 GAAATGAGGCAGCGTGCGGTACTTGAATCCGAAGGGAATACGCTTGCCTTCGACGATCTG 2275
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
|||||| | | | ||||||||||||| ||
Sbjct 2276 CTGTCCGACAAGGGCAGTCATCTGCGAAATGTT 2308
>seq6553
Length=2786
Score = 116 bits (128), Expect = 1e-20
Identities = 564/885 (64%), Gaps = 19/885 (2%)
Strand=Plus/Minus
Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685
||| ||| || | |||||| ||| || || || || ||||||||| | |||||||
Sbjct 1857 CGCAGTACTCGATAATCTCGGTGCAGAGATTGGAGCTACGGATGGTGCCCAGGTTCTTCT 1798
Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745
|||| || | ||| || |||||||| || ||| | ||| | || ||||| |||
Sbjct 1797 GGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCT 1738
Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805
| || || || || |||||| | |||| || || |||| ||||
Sbjct 1737 GCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCG 1678
Query 155806 CCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCC 155863
|| |||||| |||| || | ||| | | | ||||| || || || || ||| ||
Sbjct 1677 CCTTCTCATACTTTTCGTAAAGAGCCTC--GAACTCCTCGCCATAGCAGTCGGCCAGACC 1620
Query 155864 AGGGCACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCAT 155920
||||||| | ||| || | || | ||| | || || ||| |||||| |||
Sbjct 1619 GGGGCACTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGA---CACGCTTCAT 1563
Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980
|| | ||| ||| | ||| ||| ||||| | || |||||| | |||
Sbjct 1562 GAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCC 1503
Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040
||| ||||| || || || | ||| || | ||| | || ||||| || || ||
Sbjct 1502 GTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGAT 1443
Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097
||||| |||| | |||| |||||||| || || ||||| ||||| || |||||
Sbjct 1442 GGCAAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTACCGGGCAGTGTTGTTGAA 1383
Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAAC 156156
||||| ||||| || | | ||| ||||| || || ||||| || ||| || | || |
Sbjct 1382 GACACGAAGCATGGGGGTGACACCGTTGGAGGTACCGTTGGTACCAGCG-ATGTAAGAGC 1324
Query 156157 CAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGA 156215
||| | || | || | | || || |||||||| | |||| || || ||
Sbjct 1323 CAGTGGCACGGATTCGGTGGACGTTCAGGCCGATACCACCCG-CCATCTTGGAGATCATG 1265
Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275
|| || ||| | ||||| ||||||| ||||| || |||| ||| | ||
Sbjct 1264 GCACAGGTCTTGAGAGTATCATAAATACCCTCAATGCTGTCCTCTTTCATGTCGACCAGG 1205
Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335
|||| || | ||||| | || || ||||| ||||| || || || | |||||
Sbjct 1204 AAGCATGAGGACAGCTGAGGCTGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGG 1145
Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCC 156394
| || | || | ||||| | ||| |||||| | ||||| || ||||
Sbjct 1144 GTGAAGAATTTGCTCGACATCAGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCC 1085
Query 156395 GTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATC 156454
| || | || ||| || | ||| ||| ||||| |||||||| |||||| |||||
Sbjct 1084 CAG-ATGCCGACAGACACACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATC 1026
Query 156455 AATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
||| || ||||| | || || ||||| || || || || ||
Sbjct 1025 AATCTTGAGGAGGTAGGATCGCTCAAGAGTCTTGAAGCCAAAGTA 981
>seq2338
Length=6401
Score = 87.8 bits (96), Expect = 5e-12
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAA-GCGAGA 251483
|| || ||||| | | | ||||| || | ||| | || || ||||| ||| ||| |
Sbjct 5439 CAGACGTGGACTCGGAAGGCATCCGACACCTCAAACAGACGCTCCTTGAGGAAAGCGGCA 5380
Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543
|| ||||| | |||||| |||||||| ||||| || ||||| || ||||||||||| ||
Sbjct 5379 -GCTCCGTGGGCAATCATGCAATCACGTTCCATCTCTCCGAATCGCAGACCACCATCTCG 5321
Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGT 251570
|| | ||| ||| | ||||| |||||
Sbjct 5320 GGCACGACCTTCGACGGGCTGGCGAGT 5294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471421928514934
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |