Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3424 188 1e-41 seq5925 141 1e-27 seq860 125 1e-22 seq3240 113 7e-19 seq6553 100 5e-15 seq261 91.5 2e-12 >seq3424 Length=5400 Score = 188 bits (208), Expect = 1e-41 Identities = 243/331 (73%), Gaps = 11/331 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| |||| ||||| ||||||||||| ||||| Sbjct 3901 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTT 3842 Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||||| || || || || ||| ||||| ||||||||||| || Sbjct 3841 CTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT---GAAGAAGATACCCTCGACGGCAGC 3785 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 |||| ||||||| |||| ||||| | | | || | | |||||| || || Sbjct 3784 AAAGGCGACGAGACGCTGAGCAAAGGA---CGAGTTCTTGTCCTGGATCCATCGGATGGC 3728 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 794575 ||| || ||||| || | | |||| | || || |||||| ||||||| ||| | Sbjct 3727 CCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTCG 3668 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 | | | || ||||||| ||||||||| |||||||||||||||||||| |||||||||| Sbjct 3667 TTGAG-CTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATGT 3609 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || |||||||||||| || ||||| Sbjct 3608 TCTCCATCATGATCTGGAAGCCGTAGAAGCA 3578 Score = 147 bits (162), Expect = 3e-29 Identities = 190/259 (73%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || || || || ||| |||||| |||||||||||||| |||| Sbjct 4222 GACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAG 4163 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| |||||| | ||| ||||||| | | |||| ||||||| ||||| Sbjct 4162 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAG 4103 Query 794012 --CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| || ||||||||||||||||| || |||||||| ||||||| |||||||| Sbjct 4102 GGCGACG--AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTC 4045 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| || || ||| || | |||| | | ||||| | ||| || |||||| Sbjct 4044 ATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCA 3985 Query 794130 TCGATGATGATCTGCCTGG 794148 ||| ||||||| | ||||| Sbjct 3984 TCGGTGATGATGT-CCTGG 3967 >seq5925 Length=3129 Score = 141 bits (156), Expect = 1e-27 Identities = 188/260 (72%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 2019183 AAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACT 2019240 ||||||| || ||||||| |||||||||||||| || |||||||||| || || ||| Sbjct 1916 AAAAGAAGGTCACCCTGCCGGCCGGCCGCCACAAGCTGGTCATCCTCGACGAAGCTGACA 1975 Query 2019241 GCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGA 2019300 || | || |||| |||||||| || |||||| |||||||||| ||| ||||||||| Sbjct 1976 GCATGACCTCGGGCGCCCAGCAAGCACTCCGACGAACCATGGAAATCTACTCCAACACGA 2035 Query 2019301 CGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTT 2019360 | | || || | ||||||||| ||| | | ||||||| |||| || || | Sbjct 2036 CCAGATTCGCCTTTGCCTGCAACCAGTCCAACAAGATCATCGAGCCCCTACAATCGCGAT 2095 Query 2019361 GCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGA 2019420 |||||||| || | | || | || || |||||| ||| ||| ||| ||| Sbjct 2096 GCGCCATCCTGAGATACGCCAAGTTGACGGATGCCCAGGTCGTGAAGCGACTGATGCAGA 2155 Query 2019421 TTATCGACGCCGAAAAGGTC 2019440 ||||||| || ||||||||| Sbjct 2156 TTATCGAGGCGGAAAAGGTC 2175 >seq860 Length=10614 Score = 125 bits (138), Expect = 1e-22 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| ||||||||||||||||| || ||| | || ||||||||||| |||||| Sbjct 8053 GCCTCCAACTATCTCGACATCAAGCCCCTTCTTGATGTCGGCTGCAAGACCGTCGCCAAC 7994 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| || || ||||| || ||||||| Sbjct 7993 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGGAAGACTTTCAACATCA 7945 >seq3240 Length=5474 Score = 113 bits (124), Expect = 7e-19 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 1547 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 1488 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||||||||| || | |||||||||||| |||| Sbjct 1487 GATCAGGCGGACAGAGGTCTGGATCTCTCGGG 1456 >seq6553 Length=2786 Score = 100 bits (110), Expect = 5e-15 Identities = 177/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| ||||| || |||||||| | |||||||| Sbjct 1412 CTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGA 1353 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | ||| | ||| || | ||| || | ||| Sbjct 1352 GGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCC 1293 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | || || | || || || || || || ||||| Sbjct 1292 GATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTC 1233 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| | |||||||| | ||| ||||| || || || || | | || || Sbjct 1232 AATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACC 1173 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||||||||||| ||||| Sbjct 1172 AGCATTGAAGAGGGTGGG 1155 Score = 98.7 bits (108), Expect = 2e-14 Identities = 336/515 (65%), Gaps = 14/515 (3%) Strand=Plus/Minus Query 2069277 GGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGTCTTGAGGCCGCGACGCCACGCGTA 2069336 |||||||| | | || ||||| ||||||||||| ||||| |||||| | ||| || Sbjct 2786 GGCGGCAGCCTGCGTTCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGC 2727 Query 2069337 GGCGTGCATCGACGTGATGGACTCGGCATTCGGGACGGCA--CA-GTAGAGGTTGAGCGA 2069393 |||||| ||||| || | | | | | | | || || || |||||| || Sbjct 2726 AAAGTGCATGCTGGTGAT---CTTGCCCATGGTGGGGTCCTTCATGTGGATGTTGAGGGA 2670 Query 2069394 CTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCATGTCGATGGTCACGCGGTTGGA 2069453 |||| ||| || | ||| | |||||||| ||||| | | | | ||| | || Sbjct 2669 CTGGGACTGATCAATGAAGGCACCTCGGTCGGCAGCCATCTGAACGACCTGGCGCTGCGA 2610 Query 2069454 CACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGCGGCGGCACCTCGTCGTCATCAAA 2069513 | |||||| ||||||||| | |||||||||| | |||||| | | | || Sbjct 2609 AATCTCCCAGACGGTCTTGTAGAGGGCCTTGACCT-CGGCGGGGA-TGTTGGGGAT---- 2556 Query 2069514 GCCCTGCACCGAGCCCTGCGCTGCGATGAGGCGGTCGCGAAAGTCGGGCGTCCACAGGCC 2069573 | ||| | || || | | | || |||| |||| | | | || ||||||||| Sbjct 2555 GTTCTGGATGGAACCGTTCTCGGCAATGATTCGGTTTTTCATGGCATCCGACCACAGGCC 2496 Query 2069574 GCGCGCCATCATGCGC-TCGACCAGGTGGCGGTTGACCACGGTAAAGTCGCCCGAGAGCA 2069632 | | || || | | | || ||| | ||||||| || || ||||| | ||| | Sbjct 2495 -CATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGCCAGCGAGGA 2437 Query 2069633 CGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGCCCAGGATCT 2069692 | |||||| |||||||||| ||| |||| | |||| ||||||||||||||| Sbjct 2436 CACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCT 2377 Query 2069693 GCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGCCGTACTGTC 2069752 |||| || |||| || ||||| | || | ||||| |||||| | ||||| || Sbjct 2376 GCGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAATGCCGTGCTCCT 2317 Query 2069753 GCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGG 2069787 ||| || ||| ||| |||||||||||| || Sbjct 2316 TGACCTGCTCCCTGAGGTTCTCCCAGTCCCAGAGG 2282 Score = 96.9 bits (106), Expect = 5e-14 Identities = 281/433 (65%), Gaps = 8/433 (2%) Strand=Plus/Minus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCG-TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGT 2071642 ||||||||| || |||| | | | ||||||||||||||| ||||||||| | ||| Sbjct 1841 CTCGGTGCAGAGATTGGA-GCTACGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGT 1783 Query 2071643 TGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGG 2071702 || | |||||||| |||||| |||| || |||||| |||||||| || ||||| Sbjct 1782 TGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGG 1723 Query 2071703 CCGACCAAATTTGGCGCGCGGGCACCGAGGTCCT-CGCGCG--GCCCTNNNNNNNNNNNN 2071759 | |||| | | | || || |||| | || | |||| Sbjct 1722 CATACCAGAGCTTCTGGGCCTTCAT---GGTCTTGCGACCCTTGCCCGCCTTCTCATACT 1666 Query 2071760 NNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACG 2071819 | || || || || | |||| | ||| ||| ||| ||||| |||| | Sbjct 1665 TTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGG 1606 Query 2071820 GGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCC 2071879 | || | ||| | |||||| ||| || | || || ||| || || ||| ||| Sbjct 1605 GACACATGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCC 1546 Query 2071880 ACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGT 2071939 | || | || || ||||| || ||| ||||||||||||||||||||| ||||| Sbjct 1545 AGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGT 1486 Query 2071940 CGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGC 2071999 | || | || | || || |||||||| ||||| |||||| ||||||||| || | Sbjct 1485 CAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTC 1426 Query 2072000 GCTTGCCGCCGCC 2072012 ||||| ||| || Sbjct 1425 GCTTGTTGCCACC 1413 >seq261 Length=22061 Score = 91.5 bits (100), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 |||||||| || |||||| |||| || ||||||||||||| || || || |||||| Sbjct 3178 ACCTTCCGTCTGAACCTGTCCGTCACATCTCCCTACAACGCCGATTTCGATGGTGACGAG 3119 Query 429693 ATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTC 429737 |||||||||||||| |||||| ||| | | ||||| |||||| Sbjct 3118 ATGAACCTGCACGTTCCCCAGAGCGAGGAGACTCGCGCTGAAGTC 3074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914014448961098