Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1107 140 2e-28
seq2352 125 5e-24
seq20342 122 6e-23
seq7999 111 1e-19
>seq1107
Length=10776
Score = 140 bits (154), Expect = 2e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||||||||||||||| ||||| ||||| ||| |||| ||||
Sbjct 5562 AGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 5503
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || ||||| ||||| |||||||| | || | |||||||||||
Sbjct 5502 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 5443
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||| || || | ||| || |||
Sbjct 5442 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTC 5383
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||||||||||||| ||||||||||||||
Sbjct 5382 TTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 5351
>seq2352
Length=6378
Score = 125 bits (138), Expect = 5e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || || |||| ||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 1153 AGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCT 1212
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| || || ||||| ||||| |||||||| | || | |||||||||||
Sbjct 1213 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1272
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | || | | |||||| || | || ||||||
Sbjct 1273 TGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGACTCGACCTCCAGAGTGATGGTC 1332
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||||| ||||| ||||||||||||||
Sbjct 1333 TTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1364
Score = 96.9 bits (106), Expect = 2e-15
Identities = 138/192 (72%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| ||||||||| ||||| || || || || |||| ||||
Sbjct 1884 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 1943
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| |||||||| ||||| || |||||||| | || | |||||||||||
Sbjct 1944 TCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 2003
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || || |||||| || | ||| ||
Sbjct 2004 TGAATCTTCGACTTGAC--AT--TGTCGATGGTATCCGAGGACTCGACCTCGAGGGTAAT 2059
Query 34942 GGTCTTTCCCGT 34953
|||||| |||||
Sbjct 2060 GGTCTTGCCCGT 2071
Score = 95.1 bits (104), Expect = 8e-15
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || |||||||||||| || ||||| | ||| | || ||||
Sbjct 1609 AGGACGAGGTGGAGAGTTGACTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCC 1668
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| |||||||| ||||| || |||||||| | || | |||||||| ||
Sbjct 1669 TCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCT 1728
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | |||| || | ||| || || | ||| || |||
Sbjct 1729 TGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 1788
Query 34946 TTTCCCGTGAGGGTCTTTAC 34965
|| || ||||||||||| ||
Sbjct 1789 TTACCAGTGAGGGTCTTGAC 1808
>seq20342
Length=208
Score = 122 bits (134), Expect = 6e-23
Identities = 145/195 (74%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||||| ||| |||| | || ||||| ||||| ||||||||
Sbjct 2 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 61
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|||||| || |||||||| | || | ||||||||||| | || || || || |
Sbjct 62 GATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCAC--A 119
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | || | ||| || || | ||| |||||||| ||||||||||||||
Sbjct 120 TTCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTC 179
Query 34964 ACAAAGATCTGCATG 34978
|| ||||| ||||||
Sbjct 180 ACGAAGATTTGCATG 194
>seq7999
Length=1671
Score = 111 bits (122), Expect = 1e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || ||| | || |||| ||||| ||||| || |||||||
Sbjct 349 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 290
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||||||| |||||||| | || | ||||||||||| | || || |||||
Sbjct 289 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 230
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| || | || || |||||| || | ||| |||||||| ||||| |||||||| || |
Sbjct 229 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 170
Query 34968 A 34968
|
Sbjct 169 A 169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325609514447858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |