Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3424 111 5e-19 seq6553 102 3e-16 >seq3424 Length=5400 Score = 111 bits (122), Expect = 5e-19 Identities = 355/536 (66%), Gaps = 21/536 (4%) Strand=Plus/Plus Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408 |||||||||||||| |||||||| | ||| |||||| | || || || | | || Sbjct 3410 GAGGAGATTGATCTATCCAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGACGAG 3469 Query 443409 CGCGATTTCTTCAAATGC---ATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 | | |||||| | | ||| | |||||||| || | ||||| |||||| Sbjct 3470 C---AGTTCTTCGTCTCCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAAC 3526 Query 443466 GAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTAC 443525 ||||| || || ||| ||| || ||| | | |||||||||| | ||||||| Sbjct 3527 GAGAACCTTGTCGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTAC 3586 Query 443526 GCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAA-GAC 443584 | ||||| | ||||||||||| ||| ||||| |||| || | | ||| ||| Sbjct 3587 GGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTAC--TC-GCTCCTCATTGAC 3643 Query 443585 AC-TAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGTTCAT---GACCACG 443639 || || || || || | || || || | ||| || || ||| ||||| Sbjct 3644 ACCTACATC--AAGGAGCCAGCTCAACGAACCTACCTCTTCAACGC-CATTGAGACCATC 3700 Query 443640 CCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGC 443699 || | ||| | ||| | |||||| | | ||| || | || || | ||| | Sbjct 3701 CCCTGTATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAG-GACAAGAACTCGTC 3759 Query 443700 -TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 || | |||| || ||||| ||||||| ||||| || | || || ||||| ||| Sbjct 3760 CTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTT 3819 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||||||||||||| | || |||||||| || |||| || ||||||||| |||| Sbjct 3820 T-GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACG 3878 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 | || ||| ||| ||||||||| | || |||||| || || || ||| || || Sbjct 3879 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCC 3934 >seq6553 Length=2786 Score = 102 bits (112), Expect = 3e-16 Identities = 203/294 (69%), Gaps = 20/294 (7%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | ||||| ||||||||| || || |||||||| || || ||| ||| || Sbjct 1368 CCCATGCTTCGTGTCTTCAACAACACTGCCCGGTACGTCGACCAGGGTGGCAACAAGCGA 1427 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTT--TT 255095 || || || || |||||||||| ||||| |||||||| || | |||| ||| || Sbjct 1428 CCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCAGATGTCTTTGA---GTTCCTT 1484 Query 255096 TACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155 || ||| | | || ||||| |||||| | |||||||||| | | | ||| Sbjct 1485 GAC--CTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGACCTGTTCCTGGCTC 1542 Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGAC-----CTGGAGCCT 255210 ||||| |||||| || ||| | ||||| ||||| || || ||||| ||| Sbjct 1543 TCTGGATTCCCGATCTCTTCATG--AAGCGTGT--CGAGAAGA-ACGGTGACTGGACCCT 1597 Query 255211 CATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264 ||||||||||||| | |||||||| | ||||| | || || ||||| || Sbjct 1598 CATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAGTTCGA 1651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587909004654990