Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq3424 111 5e-19
seq6553 102 3e-16
>seq3424
Length=5400
Score = 111 bits (122), Expect = 5e-19
Identities = 355/536 (66%), Gaps = 21/536 (4%)
Strand=Plus/Plus
Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408
|||||||||||||| |||||||| | ||| |||||| | || || || | | ||
Sbjct 3410 GAGGAGATTGATCTATCCAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGACGAG 3469
Query 443409 CGCGATTTCTTCAAATGC---ATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465
| | |||||| | | ||| | |||||||| || | ||||| ||||||
Sbjct 3470 C---AGTTCTTCGTCTCCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAAC 3526
Query 443466 GAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTAC 443525
||||| || || ||| ||| || ||| | | |||||||||| | |||||||
Sbjct 3527 GAGAACCTTGTCGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTAC 3586
Query 443526 GCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAA-GAC 443584
| ||||| | ||||||||||| ||| ||||| |||| || | | ||| |||
Sbjct 3587 GGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTAC--TC-GCTCCTCATTGAC 3643
Query 443585 AC-TAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGTTCAT---GACCACG 443639
|| || || || || | || || || | ||| || || ||| |||||
Sbjct 3644 ACCTACATC--AAGGAGCCAGCTCAACGAACCTACCTCTTCAACGC-CATTGAGACCATC 3700
Query 443640 CCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGC 443699
|| | ||| | ||| | |||||| | | ||| || | || || | ||| |
Sbjct 3701 CCCTGTATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAG-GACAAGAACTCGTC 3759
Query 443700 -TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758
|| | |||| || ||||| ||||||| ||||| || | || || ||||| |||
Sbjct 3760 CTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTT 3819
Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818
| ||||||||||||||| | || |||||||| || |||| || ||||||||| ||||
Sbjct 3820 T-GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACG 3878
Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874
| || ||| ||| ||||||||| | || |||||| || || || ||| || ||
Sbjct 3879 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCC 3934
>seq6553
Length=2786
Score = 102 bits (112), Expect = 3e-16
Identities = 203/294 (69%), Gaps = 20/294 (7%)
Strand=Plus/Plus
Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040
|| ||| | ||||| ||||||||| || || |||||||| || || ||| ||| ||
Sbjct 1368 CCCATGCTTCGTGTCTTCAACAACACTGCCCGGTACGTCGACCAGGGTGGCAACAAGCGA 1427
Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTT--TT 255095
|| || || || |||||||||| ||||| |||||||| || | |||| ||| ||
Sbjct 1428 CCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCAGATGTCTTTGA---GTTCCTT 1484
Query 255096 TACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155
|| ||| | | || ||||| |||||| | |||||||||| | | | |||
Sbjct 1485 GAC--CTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGACCTGTTCCTGGCTC 1542
Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGAC-----CTGGAGCCT 255210
||||| |||||| || ||| | ||||| ||||| || || ||||| |||
Sbjct 1543 TCTGGATTCCCGATCTCTTCATG--AAGCGTGT--CGAGAAGA-ACGGTGACTGGACCCT 1597
Query 255211 CATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264
||||||||||||| | |||||||| | ||||| | || || ||||| ||
Sbjct 1598 CATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAGTTCGA 1651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1587909004654990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |