Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq6553 188 9e-43
seq3424 145 9e-30
>seq6553
Length=2786
Score = 188 bits (208), Expect = 9e-43
Identities = 1105/1753 (63%), Gaps = 43/1753 (2%)
Strand=Plus/Minus
Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887
|||| | ||| ||||||||||| |||||||| || || |||||||| | | |||
Sbjct 2779 GCCTGCGTTCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCAAAGTGC 2720
Query 117888 ATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 117947
|| || | |||| | ||| || | |||| || ||| | ||||| |||
Sbjct 2719 ATGCTGGTGATCTTGCCCATGGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGA 2660
Query 117948 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCAC 118007
|| |||||| || || || || ||||| | || || | | | || |||||
Sbjct 2659 TCAATGAAGGCACCTCGGTCGGCAGCCATCTGAACGACCTGGCGCTGCGAAATCTCCCAG 2600
Query 118008 ACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCA 118067
|| ||| |||||||| ||| | || | ||||| | ||| || |||||||| |
Sbjct 2599 ACGGTCTTGTAGAGGGCCTTGACCTCGGCGGGGATGTTGGGGATGTTCTGGATGGA---A 2543
Query 118068 CCCGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGA 118124
|| || | | |||| | | ||||| | | ||||| || || || | ||
Sbjct 2542 CCGTTCTCGGCAATGATTCGGTTTTTCATGGCATCCGACCACAGGCCCATGTCAACAAGG 2483
Query 118125 TCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAG 118184
|||| | || ||||| || ||||| || |||||| || | | | |||
Sbjct 2482 TCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAG 2423
Query 118185 ATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCT 118244
|| |||| ||||| ||||| |||||||| ||||| |||| ||| || | || |||
Sbjct 2422 ATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCA 2363
Query 118245 GTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTG 118304
|| ||||| || || | || || ||||| || | || | ||| | | | ||| ||
Sbjct 2362 GTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAATGCCGTGCTCCTTGACCTGCTCCCTG 2303
Query 118305 AGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATA 118364
|| |||||||| || | | || | | | |||||| || |||||||| |||
Sbjct 2302 AGGTTCTCCCAGTCCCAGAGGTCAGAAGGCTTCACATTCCACATGTCGAACTGGAGAATA 2243
Query 118365 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 118424
|| | || || || || |||| || || || || ||||| ||| |||| | |
Sbjct 2242 CCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCT-G 2184
Query 118425 GAGCTC-GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTT 118483
| | || |||||| || || || || || || || || | || | |
Sbjct 2183 CACCGAAGCAGTGAGGGCAGCATGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACG 2124
Query 118484 GGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATAAATACATCCGCGAGACCTTGGA 118542
|||||| || || || | | || || | || || |||| || ||||| ||||
Sbjct 2123 AGCCTCGGGAGACTCGAAAGGCATGCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGGA 2065
Query 118543 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAA 118602
|||| | ||||| || || |||| ||| || || ||||| | || || ||
Sbjct 2064 CACCAACACCAATGGGTCGGTGTCGCATGTTGCTGTTGCGAGCTTCCGTAACAGGGTAGT 2005
Query 118603 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 118662
||| ||||||| ||| || || || |||||||| ||||| || || | ||
Sbjct 2004 GGTTCACGTCGATAATCCTGTTCAGGTTGCGAACGACAACCTGTGTGACGTCGTGCAACT 1945
Query 118663 TTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACG 118719
| | | | ||| | || || || || | ||| || ||| ||||| | || |
Sbjct 1944 TCTGGAAGTCATA---GCAAGCATCATCGTAGTTGATGAACGAAGGCAGGGCCAGAGAAG 1888
Query 118720 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGT 118779
| || || || |||| |||||| | |||||| ||||| || ||||| | |
Sbjct 1887 CAAGGTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAGAGAT 1828
Query 118780 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 118839
| || || |||||||||| |||||| || || ||| ||| || |||||||
Sbjct 1827 TGGAGCTACGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGT 1768
Query 118840 AAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCG 118898
| |||||| | || | || ||||| || || | || ||| || || | ||||| | ||
Sbjct 1767 AGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGCTTCT 1708
Query 118899 GCAGCTGGCACAGTGGCGTTGG----CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954
| || || ||| ||| || |||| |||| || |||||| ||| || ||
Sbjct 1707 GGGCCTT---CA-TGGTCTTGCGACCCTTGCCCGCCTTC-TCATACTTTTCGTAAAGAGC 1653
Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014
|| ||||| || || | || | || || || || | || || | ||| |
Sbjct 1652 CTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACATGAGGGT 1593
Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074
||| | ||| || ||| || |||||||||||||| || || |||||||| ||| |||
Sbjct 1592 CCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAA 1533
Query 119075 GAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134
|| || || ||| | || || | || || || |||| || | || || |
Sbjct 1532 CAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAA 1473
Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CC 119188
|| ||| |||||||| || || ||||| | || | | || | | || ||
Sbjct 1472 GACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACC---AGGTCGCTTGTTGCC 1416
Query 119189 AGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATC 119248
| |||||| || |||| |||||| ||| || ||||||||||| || ||| ||| |
Sbjct 1415 ACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTT 1356
Query 119249 GGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306
||| || || || || ||| || ||| | | |||| | || ||||| || |
Sbjct 1355 GGAGGTACCGTTGGTACCAGCGATGTAAGAGCC--AGTGGCACGGATTCGGTGGACGTTC 1298
Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366
| || ||||| || ||| ||| ||||| || || | ||||| | | || ||
Sbjct 1297 AGGCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATA 1238
Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426
|| || || ||| | || | ||| |||||||| |||| |||||| |||
Sbjct 1237 CCCTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGA 1178
Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACA--TACCTTGGGACATCTTGT 119484
|||||||| |||||||| || || | || ||| |||| | | || |||||| ||
Sbjct 1177 GTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCT--CGACATCAGGT 1120
Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544
||||||||||| ||| ||| || || || || |||| || || ||||| |
Sbjct 1119 TGTAGGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGACAGACACACGCATGA 1060
Query 119545 ACATGTATTGGGG 119557
||||| |||||
Sbjct 1059 TCATGTGCTGGGG 1047
>seq3424
Length=5400
Score = 145 bits (160), Expect = 9e-30
Identities = 530/815 (65%), Gaps = 21/815 (3%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| || || ||||||||||||||||| ||||| || | | | ||| ||||||||
Sbjct 4206 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 4147
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| || || ||||| | | || | | | || | | | | |||||| ||
Sbjct 4146 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGGGCGAC-GAGGAGGCG 4088
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||| ||||||| ||| |||| |||||| |||| ||| ||
Sbjct 4087 GTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCA 4028
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
||||| || || | |||| ||| ||||||| || || || | |||| | ||
Sbjct 4027 GGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTG 3968
Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
||| || | ||| || | | ||| | | | || ||| || | |||| ||
Sbjct 3967 GATGACCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CATG-CAAAGTC 3911
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| |||||||||||||| |||||||| || || || ||| ||| || ||||||||
Sbjct 3910 GGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAG 3851
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
|| |||||||| | |||||| || | ||| | || ||||||||| ||||| ||
Sbjct 3850 GCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGAC 3791
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCA 130202
|| || || | |||||||| ||||||||| || | |||| | | ||| |
Sbjct 3790 GGCAGCAAAGGCGACGAGACGCTGAGCAAAGGA-CGAGTTCTTGTCCTGGATCCATCGGA 3732
Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262
| ||||| | ||||| || |||||| |||| ||||| || || | ||||| |
Sbjct 3731 TGGCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGG 3672
Query 130263 TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGA 130322
| || | ||| || |||||||| | || ||||| || || || ||| ||||
Sbjct 3671 TTCGTTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGA 3612
Query 130323 CCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 130381
| | ||| || | ||| | ||||||| | || || ||| ||||| |||||
Sbjct 3611 TGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGATCTGGACCTC- 3554
Query 130382 TCTGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 130438
| || ||| | | || | ||||| || || || || || |||| || ||
Sbjct 3553 GCCGCTGAATCG--CTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGCGAAGAAG 3496
Query 130439 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCA 130495
|| ||||| | | ||| ||| || | | ||| || | ||||||||||
Sbjct 3495 GCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCAGTCGTGG 3436
Query 130496 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
|||||||| || ||||| | |||||| ||||||||
Sbjct 3435 AGATCCTTGGATAGATCAATCTCCTCGGCAGTCCA 3401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618272999907920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |