Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6553 262 5e-65 seq3424 132 6e-26 >seq6553 Length=2786 Score = 262 bits (290), Expect = 5e-65 Identities = 938/1444 (65%), Gaps = 53/1444 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| ||| | |||| || || || || ||||| |||| Sbjct 1047 CCCCAGCACATGATCATGCGTGTGTCTGTCGGCATCTGGGGTGACGATATTGAGCGTGTC 1106 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 104339 ||||||| ||| || |||||| || | | |||| || || | || ||||||| Sbjct 1107 CTGGAGACCTACAACCTGATGTCG--AGCAAATTCTTCACCCATGCCTCCCCCACCCTCT 1164 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||||||||||| || || || ||||| |||||||| ||| || || |||| Sbjct 1165 TCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTGGTCGACATGAAAGAGG 1224 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | ||||| |||| ||||| | | ||||| ||||| ||| ||| | Sbjct 1225 ACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCGG 1284 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || |||| | | |||| | ||| || || || | Sbjct 1285 GTGGTATCGGCCTGAACGTCCACCGAATCCGTGCCACTGGCTCTTACATCGCTGGTACCA 1344 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | ||| | | || |||||||| || || ||| ||| || || || | Sbjct 1345 ACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTCAACAACACTGCCCGGTACG 1404 Query 104580 TAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| | | ||| || || | || |||| |||||||| |||| Sbjct 1405 TCGACCAGGGTGG-CAAC--AAGCGACCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGC 1461 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | ||||||||||| |||| ||||| || | ||||||| || Sbjct 1462 ACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCG 1521 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 |||||| || ||| |||||||||||||| ||||||||||||||| | || ||| ||| Sbjct 1522 CCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGA 1581 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 || | ||| | ||| | ||||| || || || ||||| |||| ||| | || Sbjct 1582 ACGGTGACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTAT-GGC 1640 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAG------AAGGTCGGGCGACTGCG 104866 |||||||| || || |||||| |||||| ||| | | | ||||| ||| | Sbjct 1641 GAGGAGTTCGAGGCTCTTTACGAAAAGTATGAGAAGGCGGGCAAGGGTCGCAAGACCATG 1700 Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || |||| || | ||| | || || ||| || | || |||||||| || | Sbjct 1701 AAGG-CCCAGAAGC-----TCTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAAC 1754 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| ||| ||| |||| ||||| || || ||||| |||| Sbjct 1755 CCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACC 1814 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| || ||||||||||| || || || | || | | | |||||| ||| Sbjct 1815 ATCCGTAGCTCCAATCTCTGCACCGAGATTATCGAGTACTGCGCCCCTGATGAGGTTGCT 1874 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 105106 || || ||||| || || | || || || | || || || || | || || Sbjct 1875 GTCTGCAACCTTGCTTCTCTGGCCCTGCC----TTCGTTCAT-CAACTACGATGATGCTT 1929 Query 105107 GATTATG------AAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGA 105160 | |||| | || | ||||| || || | |||| ||||| ||||| Sbjct 1930 G-CTATGACTTCCAGAAGTTGCACGACGTCACACAGGTTGTCGTTCGCAACCTGAACAGG 1988 Query 105161 GTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 |||| || || ||||| ||| | ||||| || || ||| ||||||| Sbjct 1989 ATTATCGACGTGAACCACTACCCTGTTACGGAAGCTCGCAACAGCAACATGCGACACCGA 2048 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATT 105279 || |||||| | ||||| |||||||| || |||| ||| || || || || || || || Sbjct 2049 CCCATTGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCTCTG-CG-CATGCCTT 2106 Query 105280 T-GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCG 105338 | || || ||| || || |||| || || || |||||||| || || || | Sbjct 2107 TCGAGTCTCCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCATGCTG 2166 Query 105339 CTCT---TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGG 105395 | || || || || | || |||| ||| || ||||| || ||||| ||| Sbjct 2167 CCCTCACTGCTTCG-GTGC--AGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGG 2223 Query 105396 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-- 105453 | ||||| || || | || | || || || || |||| |||| |||| | | || Sbjct 2224 GCTCTCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGT-GGAATGTGA-AGCCTTCTGA 2281 Query 105454 TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 105513 | || |||||||| |||| ||| | |||||||| | || |||| |||||||| Sbjct 2282 CCTCTGGGACTGGGAGAACCTCAGGGAGCAGGTCAAGGAGCACGGCATTCGCAACAGTCT 2341 Query 105514 CCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 105573 || | || || ||||| || ||| || | || ||| |||| || || || ||||| Sbjct 2342 GCTGCTTGCCCCTATGCCTACTGCCAGTACTTCGCAGATCCTGGGCAACAACGAGTGCTT 2401 Query 105574 TGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGT 105633 || || ||||| | |||||||| | | | | |||||| || ||||| | | || Sbjct 2402 CGAGCCTTACACCTCCAACATCTACCAGCGCCGTGTCCTCGCTGGCGAGTTCCAGGTCGT 2461 Query 105634 CAAC 105637 |||| Sbjct 2462 CAAC 2465 >seq3424 Length=5400 Score = 132 bits (146), Expect = 6e-26 Identities = 204/286 (71%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCA 94730 ||||| |||| || || ||||| ||| | | ||| | | ||||| | ||||| | Sbjct 3635 CTCATTGACACCTACATCAAGGAGCCAGCTCA-ACGAACCTACCTCTTCAACGCCATTGA 3693 Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 94789 || | || ||||| | ||||| || || ||||| || ||| | | |||| Sbjct 3694 GACCATCCCCTGTATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAA 3753 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | ||| |||||||| |||| ||| |||| ||||| || ||||||||||||||| | Sbjct 3754 CTCGT-CCTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCG 3812 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 || |||| | | || | |||||||||||||| || |||||||| || || ||| | Sbjct 3813 GTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTT 3872 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||||| ||||||||||||||||| || ||| || ||||| Sbjct 3873 CCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 3918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583107825273680