Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq6553 259 5e-64
seq592 152 6e-32
seq3424 100 3e-16
>seq6553
Length=2786
Score = 259 bits (286), Expect = 5e-64
Identities = 501/733 (68%), Gaps = 30/733 (4%)
Strand=Plus/Plus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289
|||||||| ||||| ||| || | ||| ||| || | ||| || || ||| | ||
Sbjct 1100 GCGTGTCCTGGAGACCTACAACCTGATGTCGAGCAAA---TTCTTCACCCATGCCTCCCC 1156
Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349
||||| ||||| |||||||| || |||||| |||| ||||||||||| | ||
Sbjct 1157 CACCCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTGGTCGACAT 1216
Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409
||| || ||| || || || || || || || |||||| |||||| ||||||||
Sbjct 1217 GAAAGAGGACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATCTCCAA 1276
Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATC 53467
| | ||||||||||||| | || | |||| ||||||| | ||| | |||
Sbjct 1277 GATGGCGGGTGGTATCGGCCTGAACGTCCACCGAA--TCCGTGCCACTGGCTCTTACATC 1334
Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527
|| || ||||| | || | || || || ||||| || ||||||||||||||
Sbjct 1335 GCTGGTACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTCAACAACACT 1394
Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587
|||||||||||| |||||||||| ||||| || | || ||||||||||| |||
Sbjct 1395 GCCCGGTACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATCTACCTTGAG 1454
Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647
|| |||||||| || | | ||||| || || ||||| ||| || || | || |||
Sbjct 1455 CCCTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAG 1514
Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707
| ||| ||| |||||||| ||||| |||||||| || ||||||||| | ||
Sbjct 1515 GTCCGCGCCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTC 1574
Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGT 53766
|||||| ||| || ||| ||| ||||| || |||||||||||||| || | | ||
Sbjct 1575 GAGAAGAACGGTGACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTG- 1633
Query 53767 CTACGGTGAGGAGT---------TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCG 53817
||| || ||||||| || |||| | |||| || | | || | |||| ||
Sbjct 1634 CTATGGCGAGGAGTTCGAGGCTCTTTACGAAAAGTAT--GA-GAAGGCGGGCAAGGGTCG 1690
Query 53818 CTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGA 53877
| |||| | ||||| | || | ||| |||| |||||| || ||| ||
Sbjct 1691 C------AAGACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCGCAGACCGA 1744
Query 53878 GACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937
||| || | || | |||| ||||||||| |||| |||||||||||||||||
Sbjct 1745 GACCGGCAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAA 1804
Query 53938 CATCGGCGTCATC 53950
| | ||| ||||
Sbjct 1805 CCTGGGCACCATC 1817
Score = 111 bits (122), Expect = 2e-19
Identities = 554/860 (64%), Gaps = 52/860 (6%)
Strand=Plus/Plus
Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155
|||||| | ||| | ||||| || || | ||||| ||| ||||||||| || | ||
Sbjct 1934 TGACTTCCAGAAGTTGCACGACGTCACACAGGTTGTCGTTCGCAACCTGAACAGGATTAT 1993
Query 55156 CGACAAGAATTACTACCCG---ACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCC 55212
|||| ||| ||||||| || ||||| ||||| |||| | || ||||| ||
Sbjct 1994 CGACGTGAACCACTACCCTGTTACGGAAGCT---CGCAACAGCAACATGCGACACCGACC 2050
Query 55213 CATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTC 55270
||| | | ||||| ||||| | || || ||| | ||||| | |||| |||
Sbjct 2051 CATTGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCT--TGCTCTGCGCATGCCTTTC 2108
Query 55271 GACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGC 55329
|| || ||||| || | ||| || | |||||| || | ||||||| ||| ||
Sbjct 2109 GAGTCTCCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGAC-CATCTACCATGCTGC 2167
Query 55330 GCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTC 55389
||| | ||| || ||||| | | ||||| ||||| || ||| | ||
Sbjct 2168 CCTCACTGCTTCGGTGCAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCTC 2227
Query 55390 GCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCAT 55443
|| || |||| ||||||||||||| | ||| | ||| ||||||| |
Sbjct 2228 TCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGTGAAGCCTTCTGACCTCTG 2287
Query 55444 G---TTTGACAAGTTGA---AGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCT 55497
| | || || | | |||| | || | | ||| | |||||| |||||
Sbjct 2288 GGACTGGGAGAACCTCAGGGAGCAGGTCAAGGA---GCACGGCATTCGCAACAGTCTGCT 2344
Query 55498 CGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGA 55557
| || || ||||| || || || | |||||| |||||||||||||| |||||
Sbjct 2345 GCTTGCCCCTATGCCTACTGCCAGTACTTCGCAGATCCTGGGCAACAACGAGTGCTTCGA 2404
Query 55558 GCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAA 55617
||| ||||| |||||||||||| |||||| ||| || || ||||| || | ||
Sbjct 2405 GCCTTACACCTCCAACATCTACCAGCGCCGTGTCCTCGCTGGCGAGTTC--CAGG-TCGT 2461
Query 55618 CAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAG 55672
||| | | || |||||||||| | || | |||| | | | || ||
Sbjct 2462 CAACCCCTGGCTGCTCAAGGACCTTGTTGACATGGGCCTGTGGT--CGGATGCCATGAAA 2519
Query 55673 A--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCCTCTGCGTC 55727
| || || |||| |||||| ||| ||||||| || | ||| | ||
Sbjct 2520 AACCGAATCATTGCCGAGAACGGT---TCCATCCAGAACATCCCCAACATCCCCGCCGAG 2576
Query 55728 -TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA---AGAGTCTGATTGACATG 55783
|||||| | ||| ||| || ||||||||| | ||| || ||| || | |||
Sbjct 2577 GTCAAGGCCCTCTACAAGACCGTCTGGGAGATTTCGCAGCGCCAG-GTCG--TTCAGATG 2633
Query 55784 AGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAAT 55843
||| || || ||||| | ||| || ||||||||||| || |||||| |||| || |
Sbjct 2634 GCTGCCGACCGAGGTGCCTTCATTGATCAGTCCCAGTCCCTCAACATCCACATGAAGGAC 2693
Query 55844 CCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903
|| | ||| |||| | | | ||||||||| ||| |||||| || || ||||||
Sbjct 2694 CCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAGCTCGGCCTGAAGACG 2753
Query 55904 GGTATGTACTATCTGCGGAC 55923
|| |||||||| ||||| ||
Sbjct 2754 GGCATGTACTACCTGCGAAC 2773
>seq592
Length=7392
Score = 152 bits (168), Expect = 6e-32
Identities = 244/347 (70%), Gaps = 10/347 (3%)
Strand=Plus/Plus
Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358
|| ||||| || | ||||||| || || |||||| ||||| || || || | ||||
Sbjct 4708 AGTCGAGTAAAGGTATAACGAGGACTGGCGGCATCCGAACCACCTGCGAGTCGAGAACCG 4767
Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418
|| | |||||| ||||| | | ||| | |||||| | ||||||||||| || ||||
Sbjct 4768 AAGTTTCCACTTGGCTCTAGGCAGTTGATGTTGTTCGATCCCACAAAGTTCTGTGCCAGA 4827
Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478
|| || || ||||| || ||||| ||||| || |||||||| || | |||
Sbjct 4828 CCGATGATGGTCTGCTGGAGAGATGCTTCACCGTGGTGGTATGCCGTCTGTTCAGACACA 4887
Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536
|| || |||| | |||||||| |||| |||| |||||| |||||| ||| || |
Sbjct 4888 TAACCAGCCAATTCCACCACCTTCTTGTCCTTGAC--CAGGTTTCTCTTGAAGCAAGCGT 4945
Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGA 117596
| | ||||||||||||| ||||| | |||||| || ||||||||| ||| |
Sbjct 4946 AGAGAACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGC---A 5002
Query 117597 TGTCCTCAGC---GCTAAAGTTGGCCAAGTCCCGGTGGATGAAATCA 117640
||| ||||| ||| ||| | | ||||||| ||||||||||
Sbjct 5003 TGTTATCAGCCATGCTGAAGAGGATGAGCTCCCGGTTGATGAAATCA 5049
Score = 129 bits (142), Expect = 6e-25
Identities = 205/294 (70%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|| || ||| | || || | ||||| |||||| |||||||| || || | || ||
Sbjct 4711 CGAGTAAAGGTATAACGAGGACTGGCGGCATCCGAACCACCTGCGAGTCGAGAACCGAAG 4770
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| |||| ||||| ||| ||||| |||||| | ||||| || ||||| |||| |
Sbjct 4771 TTTCCACTTGGCTCTAGGCAGTTGATGTTGTTCGATCCCACAAAGTTCTGTGCCAGACCG 4830
Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205
| || || ||| ||| |||||||||||||| || |||||||| || | | ||
Sbjct 4831 ATGATGGTCTGCTGGAGAGATGCTTCACCGTGGTGGTATGCCGTCTGTTCAGACACATAA 4890
Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265
|| ||||| | | |||||||| ||||| | |||||| |||||| || ||||| |
Sbjct 4891 CCAGCCAATTCCACCACCTTCTTGTCCTTGACCAGGTTTCTCTTGAAGCAAGCGTAGAGA 4950
Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319
||||||||||| || || || || |||| || ||| ||||| ||| ||
Sbjct 4951 ACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGCATG 5004
Score = 91.5 bits (100), Expect = 2e-13
Identities = 228/341 (67%), Gaps = 4/341 (1%)
Strand=Plus/Plus
Query 118003 GTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAG 118062
||| | || ||| ||||||||||| || || ||||| ||| ||||||||||||||
Sbjct 5460 GTTGATCAGGAGACCCTTGATATGACTTCCATCGTGATCCTGATCAGTCATGATCATCAG 5519
Query 118063 GCGGCCGTACCGTAAATCTCTCAGGGAGT-TATAAACCTTACCATGTTGGAGCCCGAGGA 118121
||||||| || || |||| | | | | || |||| || | || || ||||
Sbjct 5520 ATGGCCGTATCG-AAGACTCTTGGTGTCTGTGTACACCTGCTTGTGCTTCAGACCCAGGA 5578
Query 118122 TCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAA 118181
|| || | ||| | ||||| || | || | ||| | | | |||| || || |
Sbjct 5579 ACTGCTTGATGTTCTGGATTTCCTGGTTCTTGGTGATCTGGTCGACGCTGGCATCGCGGA 5638
Query 118182 CGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCA-CAACGCTC 118240
||||| || |||||| || ||||| || || |||| | ||| || | | | ||||
Sbjct 5639 CGTTGAGCATCTTACCACGGAGTGGGAAGACACCAATGTGGTCGGGGTCAAGGATGGCTC 5698
Query 118241 AAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCG 118300
|| | || ||| || |||| || |||||||| || || | || |||||||||||
Sbjct 5699 -GTCCAGAAACAGCCAGACCCTTGGCGGAGTCACCTTCAGTCAGGATCAGAGTGCACTCA 5757
Query 118301 GTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTT 118341
|| || ||||||| ||| | || || || |||||||
Sbjct 5758 TGGCCTCGGCGAGTACCTGCCAAGTTGGCCTCGACCAGCTT 5798
>seq3424
Length=5400
Score = 100 bits (110), Expect = 3e-16
Identities = 535/836 (64%), Gaps = 58/836 (7%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| |||||||| ||||| || || ||||||||||| || | | ||||||||||||||
Sbjct 4206 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 4147
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCC-ATGAGG 74579
||||||| ||||| | || ||| | |||||| | | | | | | ||||
Sbjct 4146 AAGTCGAAGGGGTTGGTGGCCTTGTAGAC---CTTCTCGTTGCCGAGGGCGACGAGGAGG 4090
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
|| || || || || | ||||||||| |||| | || | |||||||| || |
Sbjct 4089 CGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCG 4030
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697
|| || || |||||||| | ||||| ||| | | | | ||| || | || |
Sbjct 4029 CAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAA--TGGTGACGGCATCGGTGATGATGT 3972
Query 74698 TGTGAATGTCTT------TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750
|| ||| | | ||| | ||| ||| ||||| |||| || | || |
Sbjct 3971 CCTGGATGACCTGCTTGCTGGCACGGCCCTTG------AGGTGGGAGTGGAGGAGGCATG 3918
Query 74751 GCAAACTCCTGATGCGAG--CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808
|||| || | || || || || || | || | || || ||||| | ||||
Sbjct 3917 -CAAAGTC--GGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGC 3861
Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868
||||||| || ||||||||||| | ||| ||||||| |||| ||| ||||||||||
Sbjct 3860 CAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGA 3801
Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG----GTGCATCGGAAGTC 74924
| || ||||| ||||||||||| || || || || || | || | | |||
Sbjct 3800 TACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCTT-----GTC 3746
Query 74925 ----ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGAT 74977
||||| || || ||||| || || ||| | | || |||| || || ||
Sbjct 3745 CTGGATCCA--TCGGATGGCCCAGTCGGC-CTTCTTGCGGATACAGGGGATGGTCTCAAT 3689
Query 74978 CGCTTGGAAGAGGCTTGCCTTC--TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGT 75035
|| | ||||||| | ||| | | || ||||||| | ||||||| | ||
Sbjct 3688 GGCGTTGAAGAGG--TAGGTTCGTTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGC 3631
Query 75036 GAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCC 75095
||||| ||||| || || || ||| | | |||| | ||||||| | || |||
Sbjct 3630 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCC 3571
Query 75096 TCTGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGT 75153
|| | ||||| || | || |||| || | | | ||||| ||||||||||||
Sbjct 3570 TCGGGGATCTGGACCTCGCCGCTGAATCGCTC--GACAAGGTTCTCGTTGACGATGCCGT 3513
Query 75154 CCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GA 75210
| ||||| ||||| || || || | || ||| |||| ||| |||| |
Sbjct 3512 CAGAGGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGC 3453
Query 75211 GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266
| |||| ||| || | || ||| | | ||||||||||||| | |||||||||
Sbjct 3452 GGTTGTTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAA 3397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547072478923600
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